Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17f01
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.75 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.75 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   6.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 325 ISWQSLGDFFPASSRKQTCNGF 260
           + W+  GDF P    KQT   F
Sbjct: 265 VLWEGFGDFQPVHVHKQTAIAF 286


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 325 ISWQSLGDFFPASSRKQTCNGF 260
           + W+  GDF P    KQT   F
Sbjct: 265 VLWEGFGDFQPVHVHKQTAIAF 286


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   LNNNNTYKLNFSTM*N 50
           ++NNN YK N++   N
Sbjct: 90  IHNNNNYKYNYNNKYN 105


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 3   LNNNNTYKLNFS 38
           ++NNN YK N++
Sbjct: 90  IHNNNNYKYNYN 101


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 3   LNNNNTYKLNFS 38
           ++NNN YK N++
Sbjct: 90  IHNNNNYKYNYN 101


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 3   LNNNNTYKLNFS 38
           ++NNN YK N++
Sbjct: 90  IHNNNNYKYNYN 101


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 3   LNNNNTYKLNFS 38
           ++NNN YK N++
Sbjct: 90  IHNNNNYKYNYN 101


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 3   LNNNNTYKLNFS 38
           ++NNN YK N++
Sbjct: 90  IHNNNNYKYNYN 101


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 3   LNNNNTYKLNFS 38
           ++NNN YK N++
Sbjct: 323 IHNNNNYKYNYN 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,577
Number of Sequences: 438
Number of extensions: 2863
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)