Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e24
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   1.1  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.5  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.0  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   2.0  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.6  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.6  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 102 GESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGGGSR*S*KVQTG 248
           GES+  N T++S  K R     + K+AK ET K+G    +  S K+  G
Sbjct: 297 GESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLG 345


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 95  KTHKNYVDQDRVREPRHESIKRYEE 21
           KTH  +++ D V E R  SIK Y++
Sbjct: 188 KTHVYFINSDEVAEQRAVSIKAYQQ 212


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 444  AVVDVEFGFDVIHQIQDVFDDRLLLCLDHFVH-LFDLNFGLGIDLGR 307
            A VDVE    V   I++ F+DR +L + H ++ + D N  L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 105  ESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGGG 218
            E+DP+NP A S      G +   +++K+E PK     G
Sbjct: 1284 ENDPKNPKAGS---QGSGNTSASEDSKTEKPKTRTNNG 1318


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 286 MGTREGVAAKIDAETKVKIEEMNKMVQTQKE 378
           M TR+G A  +D   +V  EEM+K++Q  +E
Sbjct: 420 MSTRKGKAVFLDDIMEVAKEEMHKVMQKNEE 450


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 428 SSGLMSYTRFKTSLMTASFCVWTILFISSILTLVSASILA 309
           SSGL+     K     +S   + +L I S LTLV +S ++
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLVVSSFIS 771


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +2

Query: 143 KNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSM 322
           +N  R+K  R+ +E+RN  +  R R+  K K     + GS  +++ + W+  +  R  + 
Sbjct: 167 ENRERKKRWREQNEERNKDNDLRCRVNKKAK----KLFGSEPSIEKTNWIEAEFTRRHTK 222

Query: 323 PRPK 334
            + K
Sbjct: 223 RKEK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,507
Number of Sequences: 5004
Number of extensions: 34664
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)