Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e23
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   1.5  
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    26   3.5  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    25   6.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   8.0  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 165 DTFPQSSVSPYQYFISCSWFPFRPWLHSWYVFCRPIPSHVLWNRRIWIP 19
           +T P +   P   F SC   P    +  WYV   P P+ +  N  + IP
Sbjct: 305 ETLPMNPDLPADLFTSCLTSPIEISVR-WYVLQNPFPNKLNLNMLLKIP 352


>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 131 NILLAAPGFHLGLGFIPGMSSAVQFHPMFFGTG 33
           ++  A+ GF+L    I G+++  Q  P  FGTG
Sbjct: 29  SVWAASAGFNLSPQEIQGLAAGFQDPPSMFGTG 61


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 189 SPAAKKEKDRA*TDNCGYEKRRRVHSTDGSSKTVFKRTFSS 311
           S   KK+K +   D   +EK     ST  ++  + K+TF S
Sbjct: 113 SSMKKKKKKKKSADLSAFEKELEASSTGDATSDLSKQTFDS 153


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 256 EYTVQMEVLKQYSKERLVHQFPYEEKQPLVYTIGK 360
           EY       K +  E L H FPY  K  +  T+GK
Sbjct: 485 EYVRNSHDNKVFLIENLRHMFPYVTKNIISETLGK 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,215
Number of Sequences: 5004
Number of extensions: 36496
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)