Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e23
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81143-9|CAB03520.1|  440|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z75713-10|CAB00057.1|  440|Caenorhabditis elegans Hypothetical p...    29   3.2  
U00035-2|AAA50644.2|  413|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z99271-1|CAB16471.1|  663|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    27   7.3  

>Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical
           protein T06D8.2 protein.
          Length = 708

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 189 SPAAKKEKDRA*TDNCGYEKRRRVHSTD-GSSKTVFKRTFSSPISLRRKTTSSLH 350
           SP  +K    + +++     RRR +S   G++K + K     P +L RK +SS+H
Sbjct: 372 SPVVRKAPSSSSSNSTSSSSRRRSNSIGMGTNKFLEKENMIVPAALNRKRSSSVH 426


>Z81143-9|CAB03520.1|  440|Caenorhabditis elegans Hypothetical
           protein ZK265.8 protein.
          Length = 440

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 92  GFIPGMSSAVQFHPMFFGTGGYGYLISCFF 3
           G   G++  V FHP+F       Y + CFF
Sbjct: 98  GMYYGITVVVSFHPLFITKVDQAYHVKCFF 127


>Z75713-10|CAB00057.1|  440|Caenorhabditis elegans Hypothetical
           protein ZK265.8 protein.
          Length = 440

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 92  GFIPGMSSAVQFHPMFFGTGGYGYLISCFF 3
           G   G++  V FHP+F       Y + CFF
Sbjct: 98  GMYYGITVVVSFHPLFITKVDQAYHVKCFF 127


>U00035-2|AAA50644.2|  413|Caenorhabditis elegans Hypothetical
           protein R01H2.2 protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 299 SFEYCFRTSICTVYSPSFFVT 237
           S E C+ T+IC +YSPS   T
Sbjct: 288 SSEICYLTNICDIYSPSTTTT 308


>Z99271-1|CAB16471.1|  663|Caenorhabditis elegans Hypothetical
           protein Y43F4A.1a protein.
          Length = 663

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 297 RTFSSPISLRRKTTSSLHYW*NGRR 371
           R  ++PI LRRK  SS +Y+  G R
Sbjct: 110 RPMTTPIRLRRKCISSFYYYKQGMR 134


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 43  KNMGWNWTAEDIPGMKPRPKWKPGAANKIL 132
           K++GWN TA  +P     P W   A N  L
Sbjct: 290 KHLGWNTTANFVPTWVKLPGWLVWAGNSRL 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,561,578
Number of Sequences: 27780
Number of extensions: 204607
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)