Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e23
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   8.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 247  KDGEYTVQMEVLKQYSKERLVHQFPYEEKQPLVYT 351
            K+G++ + + +L  Y     VH FP E   P VYT
Sbjct: 909  KEGKF-MNVNMLDTYES---VHSFPTETGLPFVYT 939


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 72  FCRPIPSHVLWNRRIWI 22
           FCR  P H+++NR + I
Sbjct: 211 FCRVFPFHLMFNRDLII 227


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 261 HSTDGSSKTVFKRTFSS 311
           H  DGSS +V KRT  S
Sbjct: 311 HQKDGSSDSVIKRTVVS 327


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 261 HSTDGSSKTVFKRTFSS 311
           H  DGSS +V KRT  S
Sbjct: 226 HQKDGSSDSVIKRTVVS 242


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 261 HSTDGSSKTVFKRTFSS 311
           H  DGSS +V KRT  S
Sbjct: 545 HQKDGSSDSVIKRTVVS 561


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 72  FCRPIPSHVLWNRRIWI 22
           FCR  P H+++NR + I
Sbjct: 211 FCRVFPFHLMFNRDLII 227


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 12  GNQVSISSCSKEHGMELDG 68
           G QVSI+  + E+G ++ G
Sbjct: 82  GQQVSITYVADENGFQVQG 100


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 25  PYPPVPKNMGWNWTAEDIPGMKP 93
           P PP P   G  WT + +    P
Sbjct: 374 PLPPPPPIRGGEWTFDTLRKTTP 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,621
Number of Sequences: 438
Number of extensions: 2821
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)