Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17e22
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 33 0.14
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 30 1.8
01_06_1540 - 38111557-38111985,38112087-38112311,38112494-381128... 29 2.4
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 29 3.1
09_06_0138 + 21084679-21085437 28 5.4
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 28 5.4
02_05_0264 + 27263562-27264830 28 5.4
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 28 5.4
08_01_0199 + 1628158-1629192 28 7.2
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 27 9.5
04_04_0819 - 28312667-28313219,28315157-28316430 27 9.5
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106... 27 9.5
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 103 AMANTNAPSDSTSKYQLKATGEAAKNYDFTKARPPAKTTNVIES-IGHLI-KSCLGGGIV 276
AMA N P D +S K +A YD K PP TT +++ +GH + ++C+ +
Sbjct: 429 AMAKLNIPKDLSSDEANKYLIDACAKYD-VKCPPPQTTTRLLDKLVGHFLEETCVNPTFI 487
Query: 277 AIH 285
H
Sbjct: 488 INH 490
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 344 SVSLIACICWHALLRGYMAKSKY 412
S S ++C+CW++ ++ Y+A + Y
Sbjct: 845 SKSKLSCVCWNSYIKNYLASTDY 867
>01_06_1540 -
38111557-38111985,38112087-38112311,38112494-38112854,
38112965-38113058,38113136-38113369,38113891-38113945
Length = 465
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 211 KTTNVIESIGHLIKSCLGGGIVAIHESYKQCGLWTAFVLNFFLGFCVAYCMYMLARSAQR 390
+T V + H++ + +G G++A+ S Q G W A L CV Y L +A R
Sbjct: 17 RTGTVWTATAHIVTAVIGSGVLALAWSVAQLG-WVAGPLALAGFACVTYYTSTLLANAYR 75
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 640 LWLDWNRQPSPWSDLYPRPVA*SCEL 563
++L W+ S W ++ RP A SCE+
Sbjct: 258 MFLSWDNSSSSWMLIFQRPAAGSCEV 283
>09_06_0138 + 21084679-21085437
Length = 252
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 103 AMANTNAPSDSTSKYQLKATGEAAKNYDFTKARPPAKTTNVIESIGHLIKSCLGGGIVAI 282
A+A AP+ + + A +++D+ +A A + + H LGGG+VA
Sbjct: 170 AVAAAPAPAGLGQMKRFTSGRAAFEDFDWREAERMASDDDDDVLVAHSAPLVLGGGLVA- 228
Query: 283 HESYKQCGLWT 315
E K+ LW+
Sbjct: 229 SEPRKEVNLWS 239
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 481 ISSCCPRVRRLGTLQP 434
ISSCCPR+R+L + P
Sbjct: 293 ISSCCPRLRKLEIIDP 308
>02_05_0264 + 27263562-27264830
Length = 422
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Frame = +1
Query: 211 KTTNVIESIGHLIKSCLGGGIVAIHESYKQCGLWTAFVLNFFLGFCVAYCMYMLARSAQR 390
K ++ ++ ++ + +G G++ + ++ + G +L + YCM +L +R
Sbjct: 31 KLSSQPKTFANVFIAVVGAGVLGLPYTFSRTGWAAGSILLLSVAALTFYCMMLLVACRRR 90
Query: 391 IYGKIQVPALSYPDLAEA------SLAVGPWDNMRKYSKCFRYLVDLTITM 525
+ + S+ DL +A LAV + + S C YL+ ++ TM
Sbjct: 91 LADE-HPKIASFGDLGDAVFRGPGRLAVDTMLVLSQASFCVGYLIFISNTM 140
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -1
Query: 508 RPNIENTC--CISSCCPRVRRLGTLQPDQDMTMQVLGFCHISS-EQSVPAYTCN 356
+PN +NT +S P++R L +L ++ + QVL F S E +P + N
Sbjct: 336 KPNDDNTVFNALSFSAPKIRLLRSLTIEKKNSYQVLDFAAFSEPEYDLPIFCAN 389
>08_01_0199 + 1628158-1629192
Length = 344
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 190 TKARPPAKTTNVIESIGHLIKSCLGGGIVAIHESYKQCGL-WTAFV 324
T A A+ T+ E +G+ +K CL G ++ CG W+ V
Sbjct: 16 TCATRTARATHQFEIVGYSLKRCLAAGEFVRSSAFAACGYRWSVRV 61
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 639 YGWTGTDSRVRGQICTLDQLLDRASYDHLINA 544
+GW DS VR +IC+ D D + ++I A
Sbjct: 573 HGWPSGDSGVRQRICSSDAASDDSDNSYVIPA 604
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.5 bits (58), Expect = 9.5
Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Frame = +1
Query: 229 ESIGHLIKSCLGGGIVAIHESYKQCGLWTAFVLNFFLGFCVAYCMYMLARSAQRI-YGKI 405
++ ++ + +G G++ + ++ + G VL + +CM +L +R+ Y
Sbjct: 39 KTFANVFIAVVGSGVLGLPYTFSRTGWVAGSVLLLAVAALTFHCMMLLVACRRRLAYDHP 98
Query: 406 QVPALSYPDLAEASLAVGPWDNMRKYSKCFRYLVDLTITMDLFGACCVYQVVIARTIKQL 585
++ S+ DL A GP R++VD + + C Y + I+ T+ L
Sbjct: 99 KI--ASFGDLGAA--VCGP---------AGRHVVDAMLVLSQASFCVGYLIFISNTMAHL 145
Query: 586 VEGTDLTTDSAVGSSPAI 639
D + S + ++ AI
Sbjct: 146 YPVGDSSPSSPLLTAKAI 163
>04_04_0338 +
24509698-24510042,24510373-24510490,24510539-24510642,
24510823-24511491
Length = 411
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 205 PAKTTNVIESIGHLIKSCLGGGIVAIHESYKQCGLWTAFVLNFFLGFCVAYCMYML 372
P +T + + H+I + +G G++++ Q G W A L V YC +L
Sbjct: 30 PRRTGTMWTASAHIITAVIGSGVLSLAWGVAQLG-WVAGPAVMLLFGAVIYCCSVL 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,661,860
Number of Sequences: 37544
Number of extensions: 406949
Number of successful extensions: 1043
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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