Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e20
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    28   1.2  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   3.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   8.5  

>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 380 KNNIDPEVTLQFLKSAIYYFLTDPEN 457
           KN +  E+ +Q LKS ++  + DPEN
Sbjct: 61  KNYVSSELQMQLLKSIMFTQIQDPEN 86


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 464 LDGFQDLSRSSRWQISETGESLRDRCCFCY 375
           L+ F+DL ++S   +SET E + D    CY
Sbjct: 494 LEMFEDLFKASLAVLSETNEVVMDSKLICY 523


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 46   YVYKTHLN-YKIIKDNRSHFVICSL 117
            Y + TH   Y   +D RSH++ CSL
Sbjct: 1446 YCHDTHYGVYDAYRDFRSHYIHCSL 1470


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 136 SCTTYYRVSKLQSAIGYLL*FYNL 65
           SC  YY +  L +++ YLL FY+L
Sbjct: 268 SCHFYYSIIYLLNSMFYLLTFYSL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,500
Number of Sequences: 5004
Number of extensions: 47113
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)