Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e20
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068716-5|ABQ13070.1|  166|Caenorhabditis elegans Hypothetical ...    30   1.5  
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024751-11|ABF71718.1|  302|Caenorhabditis elegans Collagen pro...    29   3.3  
AF125952-7|AAD14695.1|  352|Caenorhabditis elegans Seven tm rece...    28   5.9  
AC006722-13|AAK68415.2|  352|Caenorhabditis elegans Hypothetical...    28   5.9  
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF068716-5|ABQ13070.1|  166|Caenorhabditis elegans Hypothetical
           protein F26D11.6 protein.
          Length = 166

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 304 GGCFFMGPRSSKGNVPSH 357
           G C F GPRSS G VPS+
Sbjct: 2   GNCIFAGPRSSHGIVPSN 19


>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
            T23F2.2b protein.
          Length = 1538

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 392  DPEVTLQFLKSAIYYFLTDPENHQGHLN 475
            +  VTL+FL  A YY+L +  + Q HL+
Sbjct: 1508 EDRVTLKFLHDAFYYYLLNRGDSQEHLS 1535


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
            T23F2.2a protein.
          Length = 1534

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 392  DPEVTLQFLKSAIYYFLTDPENHQGHLN 475
            +  VTL+FL  A YY+L +  + Q HL+
Sbjct: 1504 EDRVTLKFLHDAFYYYLLNRGDSQEHLS 1531


>AC024751-11|ABF71718.1|  302|Caenorhabditis elegans Collagen
           protein 46 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 470 DVLDGFQDLSRSSRWQIS----ETGESLRDRCCFC 378
           DV + FQ+++R  R +I     ETG++ R R C C
Sbjct: 66  DVANDFQNITRQKRDEIDDFLHETGQTARSRVCEC 100


>AF125952-7|AAD14695.1|  352|Caenorhabditis elegans Seven tm
           receptor protein 258 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 559 YFHSSLSRSCLANIFLFGFSKSQYIFYSV*MSLMVFRI-CQEVVDGRFQKLESHFGIDVV 383
           +F    +RSCL  + L GFS S  +F+ +   L++  +  Q     +F+ ++    + ++
Sbjct: 197 FFSWKAARSCLIAMGLIGFSNSIMVFFGLKAYLVMKNLMSQSTSSDKFKSIQQQLLLALI 256

Query: 382 FVT 374
             T
Sbjct: 257 LQT 259


>AC006722-13|AAK68415.2|  352|Caenorhabditis elegans Hypothetical
           protein Y19D10A.2 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 559 YFHSSLSRSCLANIFLFGFSKSQYIFYSV*MSLMVFRI-CQEVVDGRFQKLESHFGIDVV 383
           +F    +RSCL  + L GFS S  +F+ +   L++  +  Q     +F+ ++    + ++
Sbjct: 197 FFSWKAARSCLIAMGLIGFSNSIMVFFGLKAYLVMKNLMSQSTSSDKFKSIQQQLLLALI 256

Query: 382 FVT 374
             T
Sbjct: 257 LQT 259


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 452 QDLSRSSRWQISETGESLRDRCCFCYLSAPRQCDGTLPFEL 330
           QDL R +   +S+  E +R     C ++AP     T+ F L
Sbjct: 250 QDLERMAALPVSQLPEEVRSHLARCQITAPEVVHDTVAFLL 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,173,739
Number of Sequences: 27780
Number of extensions: 266590
Number of successful extensions: 620
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)