Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17e19
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 29 0.35
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 27 1.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 1.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 5.7
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 5.7
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 25 5.7
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 7.5
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 10.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 10.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 10.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 10.0
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 29.5 bits (63), Expect = 0.35
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -2
Query: 292 SIASLCGRFLRLHDTYYRFICTWRYGWILYFFDTNCNAGGWWW 164
S+ S C F HD C W + YFF + W+W
Sbjct: 244 SVLSSCALFKIFHDNDNTKACNWTISRLRYFFIVFVASFIWYW 286
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 130 DTSFFLLFYSLQGARVWWRWLRY-WFDI 50
+TSFFL + + R WWR+L Y W+++
Sbjct: 63 NTSFFL--HPFKKIRFWWRYLFYGWWNL 88
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 70 ATSTKPLHLATNKTKGKSWYQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSK 228
A +KP+ A +K SW + + + +T TTS LR + ++ R K
Sbjct: 182 ANISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEK 234
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 122 LFPFVLFVARCKGLVEVAQVLVRHC 48
++P A+ GL E AQ ++ HC
Sbjct: 761 MYPIAYLTAKSNGLEEKAQQILSHC 785
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 5.7
Identities = 5/21 (23%), Positives = 13/21 (61%)
Frame = -2
Query: 214 WILYFFDTNCNAGGWWWRLFY 152
W+L+++ C + GW++ +
Sbjct: 528 WVLFYYYRGCQSWGWYYNYHF 548
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -2
Query: 175 GWWWR--LFYRNPWTYFDTSFFLLFYSLQ-GARVWWRWLRYWF 56
GW+W +++ + W F S A +WW ++ WF
Sbjct: 68 GWFWTSLVYFYHAWDQKRNKIDFKFISRYIVATLWWMFVTQWF 110
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -1
Query: 431 FVFCTLRFSVSSAVLRKGRILVEVEV---KGWAHNQARVDQGVQQLHPK*HRISLWSFSP 261
F FC +FS+ + +L +++ +E K + H + D + + + +++++ F
Sbjct: 95 FNFCNRKFSLKTVLLLADQLISRIEFIHSKSFLHRDIKPDNFLMGIGKRGNQVNIIDFGL 154
Query: 260 VARH-IL*VHLHLEVR 216
++ HLH+ R
Sbjct: 155 AKKYRDHKTHLHIPYR 170
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 24.6 bits (51), Expect = 10.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 206 KNPPVPPSANEP 241
+NPP+PPS +P
Sbjct: 760 RNPPIPPSPQQP 771
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 518 SLTFSIIESILLLITVFSILS 456
+L FSI++SILL + + S LS
Sbjct: 241 NLPFSIVQSILLNLDIHSFLS 261
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 543 LAKFLTKFISDFLYHRIYFVVDN 475
+A+ L F+S FLY I ++V N
Sbjct: 1307 VAQILRTFVSPFLYQTISYLVGN 1329
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 142 WTYFDTSFFLLFYSLQGARVWWRWLRYWFD 53
W YF +F+L F+ L V+ RY F+
Sbjct: 969 WDYFSPNFYLTFWKLSLYDVFVPLERYEFE 998
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,511
Number of Sequences: 5004
Number of extensions: 43073
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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