Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e19
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0448 + 10370493-10370568,10370687-10370727,10372372-103724...    30   1.4  
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065...    29   1.9  
02_03_0333 + 17843605-17843661,17843713-17843881,17845606-178457...    29   2.5  
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929...    29   3.3  
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379...    29   3.3  
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698...    28   5.8  
08_02_0669 + 19868149-19870179                                         28   5.8  
05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713...    28   5.8  
07_03_1319 + 25790112-25790283,25790362-25790429                       27   7.7  
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    27   7.7  

>02_02_0448 +
           10370493-10370568,10370687-10370727,10372372-10372441,
           10372530-10372678,10373177-10373272,10373347-10373417,
           10373547-10373608,10373797-10373860,10374107-10374191,
           10374281-10374407,10374494-10374567,10374804-10374858,
           10374961-10375085,10375297-10375452
          Length = 416

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -1

Query: 431 FVFCTLRFSVSSAVLRKGRILVEVEV---KGWAHNQARVDQGVQQLHPK*HRISLWSFSP 261
           FV+C  RFS+ + ++   +++  VE    KG+ H   + D  +  L  K +++ +  F  
Sbjct: 93  FVYCGRRFSLKTVLMLADQMITRVEFMHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGL 152

Query: 260 VARH 249
             R+
Sbjct: 153 AKRY 156


>04_04_0794 +
           28104725-28104829,28105721-28105762,28106470-28106544,
           28106811-28106950,28107036-28107093,28107239-28107241,
           28107740-28107849,28108562-28108648,28108773-28108856,
           28109212-28109277,28109377-28109488,28109949-28110149
          Length = 360

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 172 WWWRLFYRNPWTYFDTSFFLLFYSLQGARVWWRW 71
           +WW +F +   T +  +F++ F+ L     WW++
Sbjct: 177 FWWYIFEQTVLTVWTVAFYIQFFYLGIVVSWWKF 210


>02_03_0333 +
           17843605-17843661,17843713-17843881,17845606-17845723,
           17845725-17846358,17846457-17846526,17847680-17847804,
           17848146-17848270,17848638-17848730,17849714-17849753
          Length = 476

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 112 KGKSWYQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSKCK*TYSMC 252
           KG++++ +   + C  T+T  P   +  + + + TR +KCK     C
Sbjct: 381 KGETYHLSRCTEICTITSTFVPRSLDYEKTDAQGTRQNKCKVVLHSC 427


>06_03_0269 -
           18991203-18991307,18991448-18991525,18992724-18992910,
           18993096-18993265,18994228-18994306,18995006-18995220,
           18995346-18995429,18995732-18995734
          Length = 306

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -2

Query: 244 YRFICTWRYGWILYF-FDTNCNAGGWWWRLF 155
           Y F   +  GW++Y  F      G WW RLF
Sbjct: 183 YTFGVIFNMGWLIYGDFKAGFERGPWWQRLF 213


>02_01_0524 +
           3798019-3798265,3798419-3798651,3798765-3799014,
           3799104-3799249,3799372-3799577,3799721-3799845,
           3800154-3800734
          Length = 595

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 127 YQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSK 228
           YQ M ++ CR    T  L  N+Y K K+   + K
Sbjct: 268 YQRMKRERCRANTETFTLMINVYGKAKQPMSSMK 301


>12_02_0592 +
           20868884-20868954,20869091-20869216,20869554-20869862,
           20870017-20870300,20870410-20871305,20871586-20871642,
           20872293-20872340,20873046-20873114
          Length = 619

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 275 WSFSPVARHIL*VHLHLEVRVDSLFFRYKLQRRGLVVAVVL 153
           W   P+ RHI+ +H+  E     + +   LQ+RG    +VL
Sbjct: 87  WVDDPITRHIISLHIDKEEGEGFMLWPVVLQKRGSYYILVL 127


>08_02_0669 + 19868149-19870179
          Length = 676

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 28  KLTHENLQCRTST*ATSTKPLHLATNKTKGKSWYQNMSKDSCRTTATT 171
           ++  E LQC   T    T P+ LAT +T  ++  +   K  CRT   T
Sbjct: 267 RINPEGLQCPI-TLELMTDPVTLATGQTYDRASIKRWVKSGCRTCPVT 313


>05_01_0012 -
           70296-70398,70494-70648,70737-70843,71138-71216,
           71343-71423,71556-72581
          Length = 516

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 157 FYRNPWTYFDTSFFLLFYSLQGARVWWRWLRYWFDIADF 41
           +YR+ W   +    LL     GA  WW W+  W + A F
Sbjct: 25  WYRSWWKTTEAGGPLLPPPAAGAGPWWVWVWQWRETAAF 63


>07_03_1319 + 25790112-25790283,25790362-25790429
          Length = 79

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 206 KNPPVPPSANEPIVCV-VQPEKTTTERC 286
           + PPVPPSA E   C+  +P+  + E C
Sbjct: 31  RRPPVPPSAAERRNCIEEEPKNKSNEPC 58


>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 292 SIASLCGRFLRLHDTYYRFICTWRYGWILYFFDTNCNA 179
           S  S+CG        +  F CT R   +L+ FD N NA
Sbjct: 538 SNCSICGLLYESSVKHIVFFCTIRVDLVLHTFDGNKNA 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,195,544
Number of Sequences: 37544
Number of extensions: 278323
Number of successful extensions: 919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)