Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e19
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   1.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   3.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   8.4  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +1

Query: 361 TSTKIRPLRRTAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDK 522
           T  +I+   + A+E     +QK     L  T    L+    N+++ ++   RDK
Sbjct: 159 TYLEIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDK 212


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 115 GKSWYQNMSKDSCRT 159
           GK  YQ MS+D  RT
Sbjct: 404 GKENYQTMSRDPART 418


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 549 STLAKFLTKFISDFLYHRIY 490
           ST++ +L  F+  F Y++IY
Sbjct: 211 STISFYLPLFVMVFTYYKIY 230


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 115 GKSWYQNMSKDSCRT 159
           GK  YQ MS+D  RT
Sbjct: 404 GKENYQTMSRDPART 418


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 101 VARCKGLVEVAQVLVRHCRFSWV 33
           V  C GL  V ++ V  C   W+
Sbjct: 239 VGNCDGLTSVFRIQVDECDRLWI 261


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 486 VVDNGFQYSIHGHSKYR 436
           ++DNG  + I GHS+ R
Sbjct: 82  LLDNGIPWVILGHSERR 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,740
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)