Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e17
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   1.8  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   2.4  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    25   2.4  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 19  RLNWSSNVDTRKTFSVSFTHICR 87
           R  WS+ +D+ ++F VSF  IC+
Sbjct: 495 RNEWSNFLDSVQSFPVSFHSICK 517


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 237 YLYKLHCYTLSIYSLLLTHSR 175
           +LY+LH +T  +YSL   H++
Sbjct: 207 FLYELHGHTSFVYSLTYIHNQ 227


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 14  LFA*IGRQMLIRERHFLFLLLIYVDCHIVGDK 109
           +FA +G  M +  R    L + Y DC  +GD+
Sbjct: 50  VFAPLGAGMFVASRRVKELRIDYTDCMNIGDE 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,409
Number of Sequences: 5004
Number of extensions: 18433
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)