Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17e17
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 27 2.8
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 27 3.7
10_08_0853 - 21076085-21076138,21076188-21076333,21076540-210766... 26 4.9
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 26 4.9
09_04_0502 - 18163192-18163435,18164000-18164154,18164243-181644... 26 6.5
01_06_0336 + 28533251-28533350,28533548-28533641,28533760-285339... 26 6.5
07_03_0980 + 23107348-23107420,23107876-23108025,23108875-231090... 25 8.6
06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950... 25 8.6
06_01_0661 - 4807712-4807759,4807857-4807995,4808107-4808351,480... 25 8.6
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFFQD 249
F F FFFFF FFF D
Sbjct: 70 FFFFFFFFFFFFFFFFFD 87
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 62 FFFFFFFFFFFFFFFF 77
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 63 FFFFFFFFFFFFFFFF 78
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 64 FFFFFFFFFFFFFFFF 79
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 65 FFFFFFFFFFFFFFFF 80
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 66 FFFFFFFFFFFFFFFF 81
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 67 FFFFFFFFFFFFFFFF 82
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 68 FFFFFFFFFFFFFFFF 83
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 69 FFFFFFFFFFFFFFFF 84
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 303 FXFCXFFFFXXXXFFFSG 250
F F FFFF FFFSG
Sbjct: 93 FFFFFFFFFFFFFFFFSG 110
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 87 FFFFFFFFFFFFFFFF 102
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 88 FFFFFFFFFFFFFFFF 103
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 89 FFFFFFFFFFFFFFFF 104
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 90 FFFFFFFFFFFFFFFF 105
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 91 FFFFFFFFFFFFFFFF 106
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 302 FXFVFFFFFXXXXFFF 255
F F FFFFF FFF
Sbjct: 92 FFFFFFFFFFFFFFFF 107
>10_08_0853 -
21076085-21076138,21076188-21076333,21076540-21076645,
21076739-21076816,21076923-21076979,21077070-21077130,
21077360-21077412,21077613-21077699,21077820-21077899,
21079469-21079681,21079824-21080064
Length = 391
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 297 FCXFFFFXXXXFFFSGXMXYYLY-KLHCYTLSIYSLLLTHS 178
F FFFF FFF + ++ +LHC + + + L S
Sbjct: 46 FFLFFFFLLFFFFFFSVCDFLVFDRLHCTAANRWRVCLDGS 86
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 85 RLSYSWR*SSLVFRHVKEDDGICP-NPKEL 171
R +Y W ++ + K DG+CP P+E+
Sbjct: 309 RYAYPWWKEKVINSYAKRKDGLCPLTPEEI 338
>09_04_0502 -
18163192-18163435,18164000-18164154,18164243-18164447,
18164530-18164819,18164845-18164853,18164920-18165085,
18165170-18165258,18165365-18165432,18165843-18166164
Length = 515
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 85 RLSYSWR*SSLVFRHVKEDDGICP-NPKE 168
R +Y W ++ + K +DG+CP P+E
Sbjct: 315 RYAYPWWKEKVIDSNAKRNDGLCPLTPEE 343
>01_06_0336 +
28533251-28533350,28533548-28533641,28533760-28533901,
28534107-28534212,28534345-28534511
Length = 202
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 231 YKLHCYTLSI-YSLLLTHSRS*FLRVWTNSVIFFDV 127
YKL YT+S+ Y + FL WTN+ I +D+
Sbjct: 89 YKL-TYTVSVLYDIACGKDLKRFLLFWTNNQIVYDI 123
>07_03_0980 +
23107348-23107420,23107876-23108025,23108875-23109024,
23109166-23109284,23109384-23109468,23109927-23109973,
23110511-23110609
Length = 240
Score = 25.4 bits (53), Expect = 8.6
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +1
Query: 130 VKEDDGICPNPKEL 171
+KE DG+CP+P ++
Sbjct: 211 IKEVDGVCPSPSDM 224
>06_01_1175 -
10094144-10094387,10094573-10094730,10094851-10095055,
10095184-10095473,10095605-10095770,10095872-10095960,
10096060-10096127,10097185-10097473
Length = 502
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 85 RLSYSWR*SSLVFRHVKEDDGICP-NPKE 168
R +Y W ++ +K DG+CP P+E
Sbjct: 301 RYAYPWWKEKIINSELKRKDGLCPLTPEE 329
>06_01_0661 -
4807712-4807759,4807857-4807995,4808107-4808351,
4808482-4808800,4809140-4809364,4809453-4809619,
4809702-4809818,4809903-4810076,4810173-4810268,
4810351-4810567,4810663-4810781,4810931-4811123,
4811207-4811358,4811448-4811568,4811980-4812074
Length = 808
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 107 KAHLFSGTSKKMTEFVQTLRN*DREWVKSNEYMDKV*QCNLYK*XN 244
KAH GT+ + + +Q+LR K+ EY+ + Q Y N
Sbjct: 180 KAHNHKGTTMMLNDRIQSLRGLQSSLRKAEEYLMGIPQDTPYSEFN 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,153,660
Number of Sequences: 37544
Number of extensions: 100279
Number of successful extensions: 349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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