Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e16
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    30   0.23 
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    27   2.8  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   2.8  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   2.8  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.5  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 462  QRYNRLRCEFSELLEDVTDQQNKAGDSEKEEFS 560
            ++Y +LRC FS+LLE V   QN    SE   FS
Sbjct: 1010 EKYLKLRCYFSQLLEKVLLVQNLHPSSEVLPFS 1042


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 102 SYYGTFIYLFSN*CLYFFNITIYKMADPKYENLPGIAYDQRDVYE 236
           S +  F+Y F++    F +  +++ A PKY+    + Y  +D+ +
Sbjct: 43  SKFSKFVYAFASISSGFLHYQLHRAAAPKYDARGSLLYVGQDLLQ 87


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 85  PTKFLIHITEHLFIYSQTSAYIFSTLQYIKWLILNMKIYPALPMTNAMF 231
           P +F +++    FI++   +YIF  L    W+     I P  P  N +F
Sbjct: 261 PFRFFLYVFIASFIWNWFPSYIFQALSLFAWVTW---IRPNSPTVNQIF 306


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 435 AEGDPETPLQRYNRLRCEFSELLEDVTDQ-QNKAGDSEKEEF 557
           A   P   LQR + +  +FSELL DV D+ Q +  +  K  F
Sbjct: 29  ANARPREKLQRLSHI--QFSELLTDVADELQRRINNDPKVRF 68


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 181 ILNMKIYPALPMTNAMFMKLMIFRKPISRSLMRRRRTSVSNNCTYRSRILSINSKGSSL 357
           I N+K   ++P     FM+ +    P+S+SL   + + +  +    S + + N  GSSL
Sbjct: 190 INNLKKSKSVPRLRGQFMEPVEHNHPLSKSL-EEQSSFLEQSKDASSNLTACNRSGSSL 247


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 21/78 (26%), Positives = 29/78 (37%)
 Frame = +1

Query: 85  PTKFLIHITEHLFIYSQTSAYIFSTLQYIKWLILNMKIYPALPMTNAMFMKLMIFRKPIS 264
           P   LI     LF+ S    Y F   +  K  +LN      L   + ++  L+  R  I 
Sbjct: 11  PRSALIRRRLSLFLQSHALMYSFLWSESAKKSLLNEVFSALLGYDHTLWNTLLPERPTID 70

Query: 265 RSLMRRRRTSVSNNCTYR 318
            S + RR    S    YR
Sbjct: 71  ASFLLRRAQGHSEGDEYR 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,793
Number of Sequences: 5004
Number of extensions: 44371
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)