Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e16
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    30   1.6  
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857...    28   6.5  
04_03_0477 - 16393764-16394054,16394424-16394672,16394849-163949...    28   6.5  
07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019...    27   8.7  
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    27   8.7  

>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 327 NP*PISAIVRYTRSPPPHKAPADRLPEDHQFHKHRVGHRQCR 202
           +P P S+  R    PPP  +     P  H  H HR  HR  +
Sbjct: 14  SPPPFSSRPRVVGPPPPPPSDPPPPPPPHHHHHHRRRHRHSK 55


>11_05_0068 -
           18782658-18782984,18784634-18784783,18784853-18785716,
           18785877-18786005,18786112-18786188,18786507-18786607,
           18786772-18786896
          Length = 590

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 466 DTIDLDVSFLNSSKMSLTNKTKLAIVKRKSSPSW 567
           D I  DV FL    +SLTN  ++++V +K   SW
Sbjct: 140 DDIPEDVVFLIIRLLSLTNAARVSMVSQKWLQSW 173


>04_03_0477 -
           16393764-16394054,16394424-16394672,16394849-16394989,
           16395654-16395795,16396287-16396665,16397178-16397436,
           16398232-16398288
          Length = 505

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 447 PETPLQRYNRLRCEFSELLEDVTDQQNKAGDSEKEEFSK 563
           PE   + Y++L   F E  + VTD +       KEEF K
Sbjct: 291 PEYLKKYYSKLLINFKEFQDQVTDNEKYMVACTKEEFQK 329


>07_03_1461 -
           26700613-26700621,26700784-26700851,26701778-26701919,
           26702011-26702318,26702415-26702481,26702543-26702664,
           26702763-26702815,26702924-26703006,26703092-26703160,
           26703235-26703633
          Length = 439

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +1

Query: 457 HYKDTIDLDVSFLNSSKMSLTNKTKLAIVKRKSSPSWPYXSTQRRNF 597
           H ++++   +    ++K+ LTN  KL + KRK    +      + N+
Sbjct: 373 HDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNGKINY 419


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 288 SPPPHKAPADRLPEDHQFHKHRVGHRQ 208
           S P H+    R P+ H  H H   H+Q
Sbjct: 41  SAPHHQQYVQRQPQQHHHHNHHQQHQQ 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,004
Number of Sequences: 37544
Number of extensions: 244732
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)