Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17e15
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.45
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 29 0.45
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 3.2
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 4.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 5.5
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 25 5.5
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 25 7.3
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 7.3
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 7.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.3
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 7.3
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.6
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.6
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.45
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 11 ATPADSWSEPSPASRGLFTLSRSVSITGRKDKVWSKCTTRWSSP-S*KRSPCCESARTSF 187
+T + ++S +P S LS S ++ S +T SS S P S+ +S
Sbjct: 191 STSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST 250
Query: 188 AACLKRYGSSPRTAARRNTSWRPTCATRSMRSGSTPCVTSSIIFRRGYSTTPASS 352
++ L SS ++ ++S + + S S S+P TSS I S++ +S
Sbjct: 251 SSSLSSSSSSSTASSSSSSS---SIISSSSSSSSSPTSTSSTISSSSSSSSSPTS 302
Score = 26.2 bits (55), Expect = 3.2
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +2
Query: 11 ATPADSWSEPSPASRGLFTLSRSVSITGRKDKVWSKCTTRWSSPS*KRSPCCESARTSFA 190
++P + S S +S + + + S S ++ SS S S S+ TS +
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340
Query: 191 ACLKRYGSSPRTAARRNT--SWRPTCATRSMRSGSTPCVTSSIIFRRGYSTTPASS 352
+ + SSP +++ +T S + + + S S S+ +S++ S+ PASS
Sbjct: 341 STISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASS 396
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 29.1 bits (62), Expect = 0.45
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 20 ADSWSEPSPASRGL-FTLSRSVSITGRKDKVWSKCTTRWSSPS 145
ADS +EP+P S + L+ ++S+ K+ KC WS PS
Sbjct: 31 ADS-AEPTPLSGSVVLCLNEAISVKAISLKLVGKCRISWSEPS 72
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 26 SWSEPSPASRG 58
SWSEPSP RG
Sbjct: 67 SWSEPSPTVRG 77
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 127 TVEQSLLKEVALLRECQDKFRSMLEKVRQQSKNCRATQHELETDMRNKEYALGIDSMCHQ 306
+ E+ ++ + + L + Q+K S LEK Q K ++ D ++ E +L C +
Sbjct: 232 STEKIMINKESSLFDSQEKIDSQLEKFLQPLKYDEIGSTQI-LDEQSVEKSLS-QGKCEK 289
Query: 307 LNNFSKGLQ 333
+ N S+GL+
Sbjct: 290 MQNESRGLR 298
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 175 GTLAARRPLSGGTAPPCRALAPNLVFSPGDRDT 77
GTL P +G AP CR + + F PG+ +T
Sbjct: 212 GTLIVWNPATG--APECRMSSDDHRFDPGNEET 242
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 5.5
Identities = 26/107 (24%), Positives = 45/107 (42%)
Frame = +2
Query: 32 SEPSPASRGLFTLSRSVSITGRKDKVWSKCTTRWSSPS*KRSPCCESARTSFAACLKRYG 211
S + +S + + + S T S ++ +S S S S+ S +
Sbjct: 152 SSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSS 211
Query: 212 SSPRTAARRNTSWRPTCATRSMRSGSTPCVTSSIIFRRGYSTTPASS 352
S TAA N++ + A+ S+ S ++ TSS I S+TP +S
Sbjct: 212 SLSSTAAS-NSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTS 257
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 289 DSMCHQLNNFSKGLQYYAGIERYDPTVCD 375
D + +L++F + ++AG YDPTVCD
Sbjct: 258 DDVVQELSSFDE--HWHAGTT-YDPTVCD 283
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 233 RRNTSWRPTCATRSMRSGSTPCVTSSIIFRRGYSTTPA 346
R ++W C + S+ G P S++ + GY+ TPA
Sbjct: 39 REFSAWTSFCVSFSVL-GLLPSFASTMYYTTGYAGTPA 75
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 106 GLEQVHDTVEQSLLKEVALLRECQDKFRSMLEKVRQQSKN 225
G + DT+ + L KE+ ++ ++ L K R+Q KN
Sbjct: 87 GADADEDTIVKDLKKELENEKKANHSLKNELLKTREQIKN 126
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 130 VEQSLLKEVAL--LRECQDKFRSMLEKVRQ 213
V + LL++V L LRE +DKFR +L +R+
Sbjct: 379 VGRFLLQKVVLVHLREAKDKFRLLLFMIRK 408
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 7.3
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +1
Query: 22 RQLERAIAGIEGPLHIVQECLYHREKRQGLEQVHDTVEQSLLKEVALLRECQDKFRSMLE 201
++L+R + + +Q + ++ E V + + L VALL E R LE
Sbjct: 1190 KKLKRTVESSNRVIADLQRGITEKDVSSTSESVGE--RSNYLNMVALLNESNKSLRENLE 1247
Query: 202 KVRQQSKNCRATQHELETDMRN 267
+ + R L+TD+ N
Sbjct: 1248 RNEEVITELREKIETLKTDLAN 1269
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/67 (25%), Positives = 39/67 (58%)
Frame = +1
Query: 25 QLERAIAGIEGPLHIVQECLYHREKRQGLEQVHDTVEQSLLKEVALLRECQDKFRSMLEK 204
+L+ +A ++ L Q+ LY+ E++++ +Q L+ E +L RE Q+K+ S++ +
Sbjct: 297 ELQSEVAALQEKL-TSQQSLYNNVT----EELNNNKQQLLISENSL-RELQEKYDSVVSE 350
Query: 205 VRQQSKN 225
++ +N
Sbjct: 351 LQVVKEN 357
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 109 LEQVHDTVEQ--SLLKEVALLRECQDKFRSMLEKVRQQSKNCRATQHELETDMRNKE 273
LE+ + T E+ S ++++ + + + + LEKVRQ S T +T++ N+E
Sbjct: 1445 LEEFNSTKEELSSTQRKLSEIMDILNTTKEELEKVRQNSNKSEGTSK--DTEIPNEE 1499
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 104 KVWSKCTTRWSSPS*KRSPCCESARTSFAACLKRYGSSPRTAARRNT 244
++WS+ ++ +S+ + S S F++CL R+ S+P ++NT
Sbjct: 4 RIWSRSSSAYSAIARSSSWFNNSL---FSSCLLRFYSNPPKKTKKNT 47
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 24.6 bits (51), Expect = 9.6
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1
Query: 64 HIVQECLYHREKRQGLEQVHDTVEQSLLKE--VALLRECQDKFRSMLEKVRQQSKNCRAT 237
HI EC R+K + ++ +T QSL ++ + DK +S + + + + ++
Sbjct: 726 HIKLECALLRDKFVNMPELFETTYQSLSRKSLPSFASTAADKEKSQNHEKKSLNSDNQSL 785
Query: 238 QHELETDMRNKEYALGIDSMCHQLNNFSKGLQY 336
+ LE + ++ G +S +NN Y
Sbjct: 786 R-PLENENQSVSSTQGSNSPLELINNLPASDDY 817
>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 242
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 204 LFKHAAKLVLALSQQGDLFQEGLLHRVVHLLQTLSFLPVIE 82
L KH AK + L + +GL H ++ LL + L VIE
Sbjct: 157 LAKHVAKTIAGLVKYVAKAIQGLAHIILSLLLFILGLEVIE 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,634
Number of Sequences: 5004
Number of extensions: 37618
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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