Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e15
         (545 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    27   0.40 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   0.70 
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    26   0.93 
AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    25   2.2  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   5.0  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   6.6  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 0.40
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 145 LKEVALLRECQDKFRSMLEKVRQQSKNCRATQHELETDMRNKEYALG 285
           LK++ L ++C ++      + +Q+ +   A + ELET  + K+ A+G
Sbjct: 244 LKDLKLAKKCTEEKEQQYNQFKQEMEAILARKKELETS-KAKQVAIG 289


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 26.2 bits (55), Expect = 0.70
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +1

Query: 91  REKRQGLEQVHDTVEQSLLKEVALLRECQDKFRSMLEKVRQQSKNCRATQHELETDMRNK 270
           +  R GLE+    ++  L ++V   +E   + +S L+ VR+Q  + +  +HE   D R K
Sbjct: 453 KTSRLGLEE-QKRIKAELSQDVGTSKERIHELQSELDNVREQLGDAKIDKHE---DARRK 508

Query: 271 E 273
           +
Sbjct: 509 K 509



 Score = 22.6 bits (46), Expect = 8.7
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 145 LKEVALLRECQDKFRSMLEKVRQQSKNCRATQHELETDMRN-KEYALGIDSMCHQLN 312
           LKEV      Q +  ++  ++R      + + ++LET  +N  EY   ++    +L+
Sbjct: 698 LKEVMKKTRRQGELTTVESQIRGLENRLKYSMNDLETSKKNINEYDRQLEDFTRELD 754


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 25.8 bits (54), Expect = 0.93
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 164 CESARTSFAACLKRYGSSPRTAARRNTSWRPTC 262
           C + R +F   L +   + RTAARRN S R TC
Sbjct: 136 CVNIRNNFH--LPKSNRNCRTAARRNHSSRNTC 166


>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 497 GTSGATRTAPSPGASQ 544
           G+ GA  T PSPGA Q
Sbjct: 8   GSPGAASTTPSPGAFQ 23


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 157 RPLSGGTAPPCRALAPNLVFSPGDRDTPGQCEEA 56
           R LS    P CR   PNL+  P +  T  + + A
Sbjct: 94  RSLSNLELPSCRLPCPNLIPRPAEVPTTPEHKSA 127


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 176 RTSFAACLKRYGSSPRTA 229
           RTS A C K + + PR A
Sbjct: 73  RTSLAPCSKLFAAEPRVA 90


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.130    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,778
Number of Sequences: 2352
Number of extensions: 11273
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)