Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e15
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.50 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.2  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 75  LDNVKRPLDAGDGSLQLSAGVAQ 7
           L NVK  LD+ +GS++++  +AQ
Sbjct: 397 LYNVKNTLDSYNGSMEINQNIAQ 419


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 148 KEVALLRECQDKFRSMLEKVRQQSKNCRATQHELETDMRN 267
           K++ L R   DK+R  +EK R+  +   A Q  ++++  N
Sbjct: 856 KKMELARHAADKWRGAIEK-RKTLRASIAAQRRIQSNGLN 894


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 167 RSKATSFRR-DCSTVSCTCSKP 105
           R+K+   RR +C T S TC +P
Sbjct: 250 RAKSIRARRTECVTNSVTCDRP 271


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 521 LFVLLHWSQIWV 486
           +F +L+WS IW+
Sbjct: 458 IFNILYWSFIWI 469


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 524 ALFVLLHWSQIWVADTLIRFSV 459
           AL+  + WS  W+  TLI  ++
Sbjct: 53  ALYERVEWSGPWILVTLIVLAI 74


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 242 CCVARQFLDC 213
           C VAR+++DC
Sbjct: 109 CMVARKYIDC 118


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 242 CCVARQFLDC 213
           C VAR+++DC
Sbjct: 109 CMVARKYIDC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.130    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,545
Number of Sequences: 438
Number of extensions: 2991
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)