Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17e14
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 32 0.35
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 31 0.46
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598... 29 3.2
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 28 4.3
03_02_0796 - 11251958-11251971,11252220-11252301,11252420-112525... 28 4.3
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 27 7.5
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 27 7.5
07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903... 27 7.5
05_06_0165 - 26088762-26089469 27 7.5
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 399 TKNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQ 527
+ R++ +I ++GATITS+ GFDTLE Y +
Sbjct: 10 SNGRITAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYME 52
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +3
Query: 372 EVVRRYTWRTKNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFG 548
+ V Y R K SV+I ++GAT+ S+ G DT+ EY N YFG
Sbjct: 30 KTVGEYVLR-KGDFSVKITNWGATMMSVVLPDSKGNLADVVLGLDTIAEYVNDTN-YFG 86
>06_03_0792 +
24658324-24658763,24659167-24659387,24659765-24659827,
24659849-24660102
Length = 325
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 132 EGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLM-PKSMKVPKNRTS--NAFEESK 302
E GD ++ + TP E + DVE VDG M K + +NR S + E K
Sbjct: 106 EAGGSTDGDSGKENEVATPDAEKE--DVEAEVDGDDPMSKKKRRQMRNRDSAMKSRERKK 163
Query: 303 QMLKEIKVTNEEAKSPC 353
+K+++ ++ ++ C
Sbjct: 164 MYVKDLETKSKYLEAEC 180
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 402 KNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFG 548
K S+++ ++GA I S+ G+DT+ EY + YFG
Sbjct: 42 KGDFSIRVTNWGAVIMSVVLPDSRGKLDDVVLGYDTIAEYVN-SSTYFG 89
>03_02_0796 -
11251958-11251971,11252220-11252301,11252420-11252500,
11252892-11253004,11253081-11253177,11253525-11253839,
11253936-11253984,11254148-11254641,11254772-11254836,
11255074-11255239,11257016-11257654
Length = 704
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 144 KASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKV---PKNRTSNAFEE 296
K GD+ ++ T Q + V+ G GLMP S KV P + S AFEE
Sbjct: 196 KGEGDIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRSIPLDGNSEAFEE 249
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 108 KFPVKMAEEGDEKASGDVEE-DTKTVTPQPEPKIPD 212
K PV+M E ++E+ D KT P+ PK+PD
Sbjct: 647 KEPVQMFMSSPESMVENLEQQDPKTPEPKSSPKLPD 682
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 27.5 bits (58), Expect = 7.5
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Frame = +3
Query: 108 KFPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNA 287
KFPVK + + + VEED T T + E DV + G + K+ S
Sbjct: 312 KFPVKSSADATQNGRTHVEEDDGTGTIKVERATRDV-VSPSSQGTVRKAAGWNLPDRSEG 370
Query: 288 FEESKQMLKEIKVTN-EEAKSPCSSSTNI---EVVRRYTWRTKNRMSVQIIS 431
+ LK +VT+ ++++S S S N R WRT S + IS
Sbjct: 371 TGTVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADRENQWRTSWTGSEESIS 422
>07_01_1180 -
11188789-11188797,11189032-11189068,11190328-11190392,
11190464-11190562,11190707-11190878,11190973-11191325,
11191451-11191561,11191637-11191708,11192203-11192420,
11192546-11192594,11192697-11192750,11192876-11192958,
11193088-11193304,11193387-11193510,11194042-11194105,
11194413-11194500,11194623-11194724,11194842-11194937
Length = 670
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 267 KNRTSNAFEESKQMLKEIKVTNEEAKSPCSSSTNIEVVRRYTWRTKNRM-SVQIISYG 437
+N+ +N+ E+K L + + + E +S + N+ V ++YT T+N+ S++++ G
Sbjct: 380 QNQENNS--ENKDQLIMVTLEDSETQSQHNEKENLPVQQQYTKSTENKKDSLEVVFLG 435
>05_06_0165 - 26088762-26089469
Length = 235
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +3
Query: 213 VELIVDGFGLM-PKSMKVPKNRTSNAFEESKQMLKEIKVTNEEA--KSPCSSSTN 368
++ ++ FGLM KS + ++ SN F+E +KE+ T E A +SP +S ++
Sbjct: 76 LDRFLEVFGLMGDKSNQSEGDKRSNEFKEFSASIKELTPTTEAAAFQSPQASPSS 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,708
Number of Sequences: 37544
Number of extensions: 218343
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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