Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e14
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 246 PKSMKVPKNRTSNAFEESKQMLKEIKVTNEEAKS 347
           P+   + +N    A  E   +LKEIK+  ++ KS
Sbjct: 475 PQVETILQNACFCARNELMMILKEIKIITDQLKS 508


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 391 LGERKIG*VFR*FRMEPRSPQSRFLTKKAFLMMW 492
           +G+R I    + FRME ++ ++  +    F++ W
Sbjct: 437 MGKRNIKAQVKRFRMETKAAKTLGIIVGGFILCW 470


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 451 EVIVAPYEII*TLILFFVLQVYRLTTSMLVLEEQGLLASSFVTFISFNIC 302
           E +     I+ +L +FF+L V  +  + LV+   G      +  +S +IC
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISIC 323


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 451 EVIVAPYEII*TLILFFVLQVYRLTTSMLVLEEQGLLASSFVTFISFNIC 302
           E +     I+ +L +FF+L V  +  + LV+   G      +  +S +IC
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISIC 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,212
Number of Sequences: 438
Number of extensions: 2665
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)