Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e12
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        36   0.007
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   3.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   4.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   5.3  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.0  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query: 184  PVFASIDKVNMLVDKAEGVNKVPSMYSRKQAPDLPTWIMYDKNILRFQGFFQQSLHEM-R 360
            P++AS DKV+ + D+ +G+N +   Y RK+  +LP      K+++  Q     S  ++  
Sbjct: 3702 PLYASADKVSSIRDQQKGINDLIE-YCRKKRTELPELSYCFKHLVSLQSLKSISRTQVDL 3760

Query: 361  SASHILRKVDIFFFLEDGTIKVIEPKTEN 447
            +    L  ++    L D  +  IE  T+N
Sbjct: 3761 TNDEFLNLMNFVLNLFDSLLSSIETATKN 3789


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 469 LISRQ-RIRLPFSYDMYYDVLDLNIGREVTFYGKTFKIVNCDNFTRVFLNRLGINVP 636
           ++SR  R+R+ +    + D LDLN+   ++F  KTF     + + R  L   G++ P
Sbjct: 574 IVSRHPRLRIAYFAQHHVDTLDLNL-NALSFLAKTFPGKGEEEYRR-HLGAFGVSGP 628


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
 Frame = +1

Query: 253  SMYSRKQAPDLPTWIMYDK---NILRFQGFFQQSLHEMRSASHILRKVDIFFFLED---- 411
            S+ S KQ   L  +++      N+   +G+ +Q    + +A  +L+ V++ F L+     
Sbjct: 751  SLLSLKQYTTLSDYLLSRNLYTNLTICEGYKKQISSLLVTARKLLQLVNMEFNLKGPFPV 810

Query: 412  GTIKVIEPKTENSGLSQGTLISRQRIRLPFSYDMYYDVL--------DLNIGREVTFY 561
            G    +  K EN G+    L+   R+R  F   +YYDV+        DL +   +TFY
Sbjct: 811  GIYNDLIIKLENLGIR---LVVLNRVRSRFGLYLYYDVVKNMIDYRKDLIVSMTLTFY 865


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 433 PKTENSGLSQGTLISRQRIRLPFSYDMYYDVLDLNIGREVTF 558
           P T N  L    L+S   +    S D  YD+++ N G +  F
Sbjct: 447 PSTRNYALIGRKLLSNDLLHSSLSTDALYDIVEKNHGSQGFF 488


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 400 FLEDGTIKVIEPKTENSGLSQGTL 471
           +LE+ +IK IE     SGLS+G L
Sbjct: 66  YLEEASIKRIEKSQYFSGLSEGAL 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,853
Number of Sequences: 5004
Number of extensions: 49480
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)