Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e05
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    26   3.7  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   8.4  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   8.4  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 103 KHSKNIIQTRCDWINANLVRS*TELVELSPSIRKFIRN*SMTRLRSEQR-MWRDLVRYLD 279
           + + N  + RC W           +VE      K  R   M R+ ++ R  WRD+VR+ D
Sbjct: 304 RRAYNPFEDRCVWSKEEDEELRKNVVEHGKCWTKIGRK--MARMPNDCRDRWRDVVRFGD 361

Query: 280 KL 285
           KL
Sbjct: 362 KL 363


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 182 STNSVQLLTRFALIQSHRVWIMF--LLCFGCI 93
           STN  +  +RFA   SHR   +F    C+ CI
Sbjct: 517 STNRHKAFSRFADFNSHRFPCIFTSFSCYNCI 548


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 182 STNSVQLLTRFALIQSHRVWIMF--LLCFGCI 93
           STN  +  +RFA   SHR   +F    C+ CI
Sbjct: 517 STNRHKAFSRFADFNSHRFPCIFTSFSCYNCI 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,029
Number of Sequences: 5004
Number of extensions: 29298
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)