Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e05
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   2.8  
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395...    27   8.5  

>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 356  IFFPLYHLEFERLP*FSPYLQSTNNLSRYLTKSLH-ILCSDRSRVMD*FRMNFLID 192
            +FF    +EFE L    P+L   N+L   + K L+ I CS RS +   F  NFL++
Sbjct: 2009 VFFSS-QMEFELLKDSIPHLVVDNSLPDAILKKLYDIACSARSNIY-LFTCNFLLE 2062


>02_01_0541 -
           3950336-3950353,3950660-3951061,3951174-3951431,
           3951554-3951754,3951861-3952203,3952286-3952344,
           3952757-3953082,3953283-3953745,3954180-3954794,
           3955600-3955896
          Length = 993

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -3

Query: 308 SPYLQSTNNLSRYLTKSLHILCS 240
           +PY+++ +N ++  +K LH+LCS
Sbjct: 277 NPYIRAASNDAQEASKMLHLLCS 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,213,901
Number of Sequences: 37544
Number of extensions: 153444
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)