Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e04
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   0.66 
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   1.2  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    24   2.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    24   2.7  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    23   6.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    23   6.2  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    23   6.2  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    23   8.2  

>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 24  KSKEYHHILEWSLITGSKLIEVPAKKMNTLN 116
           K  E H  + WS  +  K+ ++P + +N LN
Sbjct: 120 KPSEIHPHMSWSSKSEGKMFKIPEELLNKLN 150


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 51  EWSLITGSKLIEVPAKKMNTLN*GG 125
           EW     +K+  VPA+K+ TL+ GG
Sbjct: 427 EWFRFNDAKVSIVPAEKIETLDGGG 451


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 126 ILPNLACSFSLPELQLVLNRLSDSTPGCDGIPYSFLINSK 7
           ++  LA  FSL  L L ++ +SDS P  D +    ++  K
Sbjct: 25  VVKALALIFSLLILYLTISNVSDSPPKRDSLSLDDIVLQK 64


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 148 PSFRLIRHPP*FSVFIFFAGTSISFEPV 65
           PSFR     P  S   F +G+SI  EPV
Sbjct: 249 PSFRSANASPFDSCDSFHSGSSIPIEPV 276


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 32  GIPSHPGVESDNRFKTN 82
           G+P  PG+  D+ F TN
Sbjct: 106 GVPRKPGMTRDDLFATN 122


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 115 IREDGESGESLEQNLFH 165
           IREDG    +L QN FH
Sbjct: 399 IREDGSVISALAQNSFH 415


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 165 MEKILFQAFA*FAILPNLACSFSLPELQLVLNRLSDS 55
           + + LF++   ++ L     S   P+ +LVL +L+DS
Sbjct: 342 LNEALFESMLGYSDLLTKDISLIFPDFKLVLQQLADS 378


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 KAWNKIFSIPLFSFSEEAF*WPLQHFYK 223
           K  +K+F +   S+S+++  +P   FYK
Sbjct: 182 KKMDKVFDVHQLSYSKDSVLFPPTLFYK 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 989,923
Number of Sequences: 5004
Number of extensions: 16116
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)