Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e04
         (253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621...    27   1.6  
11_04_0443 - 17808897-17809110,17809169-17813652                       27   2.1  
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588...    26   3.7  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    26   4.8  
08_01_0050 + 350768-351214,352597-352717,352944-353118,353225-35...    25   8.4  

>11_01_0737 +
           6211149-6211466,6212022-6212183,6212290-6213101,
           6213188-6213395,6214157-6214364,6214752-6215206,
           6215585-6216011,6216391-6216471,6216571-6216761,
           6216855-6216998
          Length = 1001

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 47  PGVESDNRFKTN*SSGKENEHAKLGRMANQAKAWNKIFSIPL 172
           PG  + N F+T+  +G  N   +LG ++ ++K   +I S  +
Sbjct: 382 PGPSAHNSFRTDARNGDFNHGPRLGGLSKESKEIKEIISFSI 423


>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  ILEWSLITGSKLIEVPAKKMNTLN*GGWRI 134
           +LEW     S+ +E+PAK M+ +  G W +
Sbjct: 661 LLEWLRNLKSRGVELPAKFMDCIRRGSWLV 690


>01_06_1535 +
           38057802-38057999,38058338-38058437,38058730-38058890,
           38059166-38059363,38059442-38059534,38059732-38059854,
           38060637-38060884,38061004-38061175,38061407-38061493,
           38061523-38061786,38062415-38062577,38062839-38062926,
           38063010-38063079,38063566-38063694,38063773-38063811,
           38065539-38065760,38065935-38065999,38066095-38066288,
           38066539-38066805,38066908-38066995,38067091-38067216,
           38067291-38067400,38067523-38067671
          Length = 1117

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 47  PGVESD-NRFKTN*SSGKENEHAKLGRMANQAKAWNKI 157
           PG  S  + +KT+ S+G EN+ AKLG  +N     N++
Sbjct: 763 PGSSSPASNYKTSFSTGCENKRAKLGE-SNPTDIMNEV 799


>10_06_0143 -
           11183574-11183761,11183989-11184344,11184437-11184592,
           11184825-11184994,11185906-11186064,11186856-11187164,
           11187281-11187576,11187825-11188174,11188279-11188434,
           11188634-11188803,11189289-11189447,11190702-11191010,
           11191172-11191458,11191911-11192263,11192366-11192521,
           11192680-11192849,11195800-11195958,11196937-11197254,
           11197658-11197786
          Length = 1449

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 24  KSKEYHHILEWSLITGSKLIEVPAKKMNTLN*GGWRI 134
           K  + H  LEW +  G   +  P   +  +N GGW +
Sbjct: 469 KHVQNHWSLEWMIKNGYISLNQPKLPIRAVNLGGWLV 505


>08_01_0050 +
           350768-351214,352597-352717,352944-353118,353225-353295,
           353575-354209
          Length = 482

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 105 SFSLPELQLVLNRLSDSTPGCDGIPY 28
           S   P   +++ R+S +TP C G+ +
Sbjct: 303 SVGKPSSNIIIQRVSGTTPTCSGVGF 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,991,229
Number of Sequences: 37544
Number of extensions: 93088
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)