Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17e04
(253 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinas... 25 7.1
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 25 9.4
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 25 9.4
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 25 9.4
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 25 9.4
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 25 9.4
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 25 9.4
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 25 9.4
>AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinase b
protein 4 protein.
Length = 381
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 149 SKLSPDSPSSLI*RVH 102
+KLSPD+PS + R+H
Sbjct: 64 TKLSPDTPSCFLIRIH 79
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 53 VESDNRFKTN*SSGKENEHAK 115
VESD+R K N GK H K
Sbjct: 2781 VESDDRMKLNNEDGKTKFHVK 2801
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 53 VESDNRFKTN*SSGKENEHAK 115
VESD+R K N GK H K
Sbjct: 3310 VESDDRMKLNNEDGKTKFHVK 3330
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 53 VESDNRFKTN*SSGKENEHAK 115
VESD+R K N GK H K
Sbjct: 2991 VESDDRMKLNNEDGKTKFHVK 3011
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 53 VESDNRFKTN*SSGKENEHAK 115
VESD+R K N GK H K
Sbjct: 2781 VESDDRMKLNNEDGKTKFHVK 2801
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 53 VESDNRFKTN*SSGKENEHAK 115
VESD+R K N GK H K
Sbjct: 3310 VESDDRMKLNNEDGKTKFHVK 3330
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 53 VESDNRFKTN*SSGKENEHAK 115
VESD+R K N GK H K
Sbjct: 2991 VESDDRMKLNNEDGKTKFHVK 3011
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 53 VESDNRFKTN*SSGKENEHAK 115
VESD+R K N GK H K
Sbjct: 2200 VESDDRMKLNNEDGKTKFHVK 2220
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 85 KFRQRK*TR*IREDGESGESLEQNLFHPSF 174
+ R+R T+ +ED E E ++N + PSF
Sbjct: 383 EIRERNVTKGRKEDDEEKEEADKNGYAPSF 412
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 85 KFRQRK*TR*IREDGESGESLEQNLFHPSF 174
+ R+R T+ +ED E E ++N + PSF
Sbjct: 383 EIRERNVTKGRKEDDEEKEEADKNGYAPSF 412
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,316,799
Number of Sequences: 27780
Number of extensions: 86963
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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