Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17e04
         (253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   1.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   4.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 105 SFSLPELQLVLNRLSDST 52
           +  LP+LQLV N  +D T
Sbjct: 206 NIELPQLQLVKNYTADCT 223


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 105 SFSLPELQLVLNRLSD 58
           +F+LPELQ  LN L D
Sbjct: 313 NFALPELQHNLNILVD 328


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 4/13 (30%), Positives = 10/13 (76%)
 Frame = -1

Query: 238 CIVIYFIKMLKRP 200
           C+ ++ ++ L+RP
Sbjct: 63  CVAVFLVRKLRRP 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,221
Number of Sequences: 438
Number of extensions: 1008
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)