Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d24
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.3  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    26   2.3  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   3.1  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   7.1  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    24   9.4  

>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 18  IXSTTRDFVLXYNTPVHLCRSKSVXSNVRLILHLFPLSG 134
           I  T R+ +     P +L  S S+ SN  + LHLF LSG
Sbjct: 183 IHKTVRNHLFSPPLPSNLALSFSI-SNASVCLHLFRLSG 220


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 216 RDVLAQLP*GTSSSSCWGTQNVVCLP 293
           +DVL  L  GTS+++   TQN VC P
Sbjct: 288 KDVLLSL--GTSTTALMATQNYVCSP 311


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 288 DRPRSGCPNNWNSTSPTGVERGHHVRTTHPTSESRHVNWSR 166
           D   S  P + NS +P         R TH  S+S H N+SR
Sbjct: 583 DSNMSSSPVSGNSNTPFNKFPNSVSRNTHFESKSPHPNYSR 623


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 308 RCSITGKTDHVLGAPTTGTRRPLRELSED 222
           +CSI  + D+   APTT   + LR   E+
Sbjct: 378 KCSIASRIDNFSDAPTTAFGQVLRRQVEE 406


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 252 STSPTGVERGHHVRTTHPTSESRHVNWSRDKXANN 148
           S +PTG     HV+T    SE + V     K  NN
Sbjct: 345 SRNPTGALLHSHVQTYPEGSEQQQVTGYHHKDGNN 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,912
Number of Sequences: 5004
Number of extensions: 35692
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)