Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17d24
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0045 - 7705728-7707581 29 1.3
12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753 29 1.7
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 1.7
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 2.3
10_07_0148 + 13413078-13414295 28 3.0
01_06_1658 - 38954953-38955145,38955310-38955368,38955541-389555... 28 3.0
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 27 5.3
03_05_0557 + 25605355-25605798 27 5.3
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492 27 7.0
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 27 7.0
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 27 7.0
03_04_0197 + 18375497-18375943,18376666-18377052,18377166-183774... 27 7.0
02_05_0799 - 31818142-31818422,31818966-31819029 27 7.0
11_06_0327 - 22392021-22392316,22393879-22394389,22394843-22394908 27 9.2
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 27 9.2
>11_02_0045 - 7705728-7707581
Length = 617
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 186 VIRRWGEWCERDVLAQLP*GTSSSSCWGTQNVVCLPGDGASHGGASWSEL 335
+++RW + ++L+Q+P T S W N +C G + GA+ E+
Sbjct: 545 ILKRWTRNAKNNILSQVPANTKGSLAWRC-NDLCRDGIRFAEEGATSEEI 593
>12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753
Length = 375
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 246 TSSSSCWGTQNVVCLPGDGASHGGASWSEL 335
+SSS+ G V+ DG S G+SW EL
Sbjct: 329 SSSSTAAGWSEVMSFSRDGGSSSGSSWDEL 358
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 312 HAMLHHREDRPRSGCPNNWNSTSPTGVERGHHVRTTHPTSESRHVNWSRDK 160
+A+LHH++ P ++ ST+ + V + R PT S + + DK
Sbjct: 775 NALLHHKQTEPPKDPKDHTASTNNSHVSKEGSSRNVKPTLTSEETHTAEDK 825
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 311 MRCSITGKTDHVLGAPTTGTRRPLRELSEDITFAPLTP 198
MRCS D +L A PLR +SE+I L P
Sbjct: 1456 MRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAP 1493
>10_07_0148 + 13413078-13414295
Length = 405
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 231 QLP*GTSSSSCWGTQNVVCLPGDGASHGGASWSELK*ELPKRSRLTICIIG-EDGLAA 401
+LP T+S W + GDG SHGG + L L + IG E+G AA
Sbjct: 187 ELPPATASRIEWYRDLRLDKAGDGVSHGGVVAAGLPPNLNSIGAARVAAIGREEGTAA 244
>01_06_1658 -
38954953-38955145,38955310-38955368,38955541-38955587,
38956264-38956294,38956507-38956569,38956760-38956855,
38956939-38957022,38957112-38957204,38957505-38957582,
38957938-38958028,38958108-38958208,38958303-38959121,
38959216-38959266
Length = 601
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -2
Query: 326 PACAPMRCSITGKTDHVLGAPTTGTR----RPLRELSEDITFAPLTPPP 192
P C+P+ C +T HV+GAP R LR ++ + P+ P
Sbjct: 10 PTCSPL-CPVTSSVAHVVGAPALRGRVVEVSALRSYADPLVARPVPDRP 57
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = -2
Query: 266 PTTGTRRPLRELSEDITFAPLTPPPNHATLTGPVIXSQITCXXGT 132
PTT RRPLR L + T P PPP + P C T
Sbjct: 17 PTTARRRPLRLLPGNRT--PHPPPPQGSRPRKPAPTPAAACRPAT 59
>03_05_0557 + 25605355-25605798
Length = 147
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = -2
Query: 329 TPACAPMRCSITGKTDHVLGAPTTGTRRPLRELSEDITFAPLTPPPNHATLT 174
T AC+P R + G PTTG R PLR AP PPP +T
Sbjct: 13 TSACSPPRVRLVG--------PTTGRRSPLRA-------APAPPPPRAYKVT 49
>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
Length = 790
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 348 AILTLIHSSLRPHAMLHHREDRPRSGCPNNWNSTSPTGVERGHHVRTTHPTSESRHV 178
A ++IH S+ P A +HH + P P + GVE+ V P S HV
Sbjct: 168 ATASVIHGSVLPDASMHH-QSAPT--IPVHHLEHLDNGVEQAAAVAVVDPDENSLHV 221
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 243 GTSSSSCWGTQNVVCLPGDGASHGGASWSELK*ELPKR 356
G+ WGT + L + HG ASW + E+ R
Sbjct: 23 GSGGGEIWGTSEDLLLACAVSRHGTASWDAVAKEMQSR 60
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 394 SPSSPIMQMVRRDRLGNSHFNSLQLAPPCDAPSPGRQTTFWVP 266
S S P M+M+ R NSH SL+ + D SP ++ P
Sbjct: 388 SASLPSMEMIPAIRNLNSHQESLEESSSADCISPTKRKALTAP 430
>03_04_0197 +
18375497-18375943,18376666-18377052,18377166-18377410,
18377651-18378221
Length = 549
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Frame = +3
Query: 168 GTS*RGVIRRWGEWCERDVLAQL--P*GTSSSSCWGTQNVVCLPGDGASHGGASWSELK* 341
G + RG +RRW WC R A + G + + WG V A G +
Sbjct: 74 GGAHRGGVRRWRRWCRRAGAAGVVAHSGAAGARGWGRWGVESAAAAAALGGWGGARGRRA 133
Query: 342 ELPKRSRLTICIIGED 389
P R R + +G +
Sbjct: 134 CAPWRRRRSAAALGAE 149
>02_05_0799 - 31818142-31818422,31818966-31819029
Length = 114
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 219 HVRTTHPTSESRHVNWSRDKXANNLXXRYQITEINV 112
H T+ PT+E++ NWS +K + IT + V
Sbjct: 78 HNSTSDPTTEAKFRNWSSNKHTLTKLRQGSITNLKV 113
>11_06_0327 - 22392021-22392316,22393879-22394389,22394843-22394908
Length = 290
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 276 SGCPNNWNSTSPTGVERGHHVRTTHPTSESRHV 178
S P ST+P V+R HP SRH+
Sbjct: 176 SSSPTGMTSTTPIAVDRSTATIPNHPYELSRHL 208
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 213 ERDVLAQLP*GTSSSSCWGTQNVVCLPGDGASHGGASWSELK 338
++DVL S S WG V L G ++ G +W + K
Sbjct: 2829 KKDVLGSCDSHQKSPSTWGATAKVLLGGRAWAYNGGAWGKEK 2870
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,401
Number of Sequences: 37544
Number of extensions: 280318
Number of successful extensions: 830
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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