Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17d24
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical ... 29 1.2
AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical ... 29 1.2
Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical p... 29 2.1
AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein. 29 2.1
Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical pr... 28 3.6
AC024882-18|AAF60938.1| 392|Caenorhabditis elegans Hypothetical... 27 4.8
Z70208-12|CAA94137.2| 209|Caenorhabditis elegans Hypothetical p... 27 6.3
Z75710-7|CAN99690.1| 855|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z75710-6|CAB00028.1| 857|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF106573-10|AAC78155.2| 862|Caenorhabditis elegans Gex interact... 27 8.3
>AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical
protein H20J18.1b protein.
Length = 909
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -3
Query: 406 MRAASPSSPIMQMVRRDRLGNSHFNSLQLAPPCDAPSPGRQTTFWVPQQLELDVPY 239
M+AA + Q ++ S F + PPC P PG + W VPY
Sbjct: 240 MQAAQAAQQAAQQAAAHQMQQSQFVNAIANPPCPPPPPGIPSMPWPISTPVCHVPY 295
>AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical
protein H20J18.1a protein.
Length = 947
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -3
Query: 406 MRAASPSSPIMQMVRRDRLGNSHFNSLQLAPPCDAPSPGRQTTFWVPQQLELDVPY 239
M+AA + Q ++ S F + PPC P PG + W VPY
Sbjct: 240 MQAAQAAQQAAQQAAAHQMQQSQFVNAIANPPCPPPPPGIPSMPWPISTPVCHVPY 295
>Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 227 EDITFAPLTPPPNHATLTGPVIXSQIT 147
+DI F+P PPP L G V+ IT
Sbjct: 210 KDIAFSPYNPPPGPRKLRGDVLYIDIT 236
>Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 227 EDITFAPLTPPPNHATLTGPVIXSQIT 147
+DI F+P PPP L G V+ IT
Sbjct: 210 KDIAFSPYNPPPGPRKLRGDVLYIDIT 236
>AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein.
Length = 1247
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 227 EDITFAPLTPPPNHATLTGPVIXSQIT 147
+DI F+P PPP L G V+ IT
Sbjct: 210 KDIAFSPYNPPPGPRKLRGDVLYIDIT 236
>Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical
protein ZK1067.4 protein.
Length = 541
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 290 KTDHVLGAPTTGTRRPLRELSEDITFA 210
+TD+ L P T T RPLR +S +TFA
Sbjct: 384 ETDNSLSEPITATPRPLR-VSRSMTFA 409
>AC024882-18|AAF60938.1| 392|Caenorhabditis elegans Hypothetical
protein Y9C9A.16 protein.
Length = 392
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 337 FNSLQLAPPCDAPSPGRQTTF 275
F+ L ++PPC AP P R + F
Sbjct: 289 FSLLHISPPCTAPEPLRSSHF 309
>Z70208-12|CAA94137.2| 209|Caenorhabditis elegans Hypothetical
protein F54B11.4 protein.
Length = 209
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 12 GLIXSTTRDFVLXYNTPVHLCR 77
GL RDF + N+P+H CR
Sbjct: 173 GLCKGGCRDFAIAINSPIHDCR 194
>Z75710-7|CAN99690.1| 855|Caenorhabditis elegans Hypothetical
protein D1081.7b protein.
Length = 855
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 348 AILTLIHSSLRPHAMLHHREDRPRSGCPN 262
+ILT I SS R H++L HR +PR+ N
Sbjct: 410 SILT-IQSSRRNHSVLRHRTIKPRNPTQN 437
>Z75710-6|CAB00028.1| 857|Caenorhabditis elegans Hypothetical
protein D1081.7a protein.
Length = 857
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 348 AILTLIHSSLRPHAMLHHREDRPRSGCPN 262
+ILT I SS R H++L HR +PR+ N
Sbjct: 412 SILT-IQSSRRNHSVLRHRTIKPRNPTQN 439
>AF106573-10|AAC78155.2| 862|Caenorhabditis elegans Gex interacting
protein protein 12 protein.
Length = 862
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 345 LPKRSRLTICIIGEDGLAARISRVTVSLSKPEQDE 449
LPK++ L+I G A+R++ + V+L E+DE
Sbjct: 443 LPKKTSLSIKRRGSSRSASRLASLDVTLETVEEDE 477
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,485,152
Number of Sequences: 27780
Number of extensions: 217119
Number of successful extensions: 588
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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