Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d24
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    26   0.17 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    26   0.17 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   4.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 276 SGCPNNWNSTSPTGVERG-HHVRTTHPTSESRHV 178
           +GC +N  STSP+G  +        HP S S+H+
Sbjct: 76  AGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHL 109


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 276 SGCPNNWNSTSPTGVERG-HHVRTTHPTSESRHV 178
           +GC +N  STSP+G  +        HP S S+H+
Sbjct: 76  AGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHL 109


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 330 HSSLRPHAMLHHRED-RPRSGCPNNW 256
           H +     M H+  + R R+GCP +W
Sbjct: 362 HHTASESFMKHYENEMRLRNGCPADW 387


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 143 HKLFAXLSRDQLTWRDSEVG 202
           +++F  L    + W+D+E+G
Sbjct: 50  YEVFRYLELAMIRWKDTEIG 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,908
Number of Sequences: 438
Number of extensions: 2691
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)