Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d22
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    27   2.0  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   6.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.0  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.9  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   7.9  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 452 HLSKAINTLFESDIIKNSMLSFCKLYSVTCLY 547
           HLS  ++T+ +   + NS +SF   YS T L+
Sbjct: 300 HLSSRLSTIVQQHQLANSFMSFSTSYSDTGLW 331


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 84  RFGHCQTPSHLFRFKIIDNNRCTYCG 7
           RFGH +     F  ++  +N CT CG
Sbjct: 334 RFGHLKIVDFGFAKRVSTSNCCTLCG 359


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -2

Query: 417 KIREALTSLDTPVTFKWVPSHRG---IKGNEIVDGIVNSN 307
           +I E  TSL T VT  W PS      +K N++ +  +  N
Sbjct: 214 QIEETFTSLSTFVTNNWSPSEYEDVMVKSNKVYETTLKRN 253


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 444 HYRNNYLLYKIREALTSLDTPVTFKWVPSH 355
           H+R+ + L +IR  L+  D+ ++F   P H
Sbjct: 44  HHRHMFPLARIRSELSEQDSSISFTHDPLH 73


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 AINTLFESDIIKNSMLSFCKLYSVTCLYICEV*R 565
           ++  L + D I  S+L+F K YS    + C V R
Sbjct: 351 SVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,231
Number of Sequences: 5004
Number of extensions: 50128
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)