Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17d22
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 30 1.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 1.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 1.4
U64845-5|AAC48027.1| 581|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 28 5.5
AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical ... 27 7.2
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 27 9.5
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 27 9.5
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 27 9.5
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 27 9.5
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 27 9.5
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 27 9.5
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = -2
Query: 576 ILYNLYTSQIYRHVTE*SLQNDNMEFLIISDSKSVLMALDKCHIHYRNNYLLYKIREALT 397
+ Y +Y + ++ + S + D E+ ++ ++K D HI + L + + +
Sbjct: 8881 VKYEIYDNIASLYIPKMS-KRDGGEYTVVLENKYGKDESD-LHITMVDTPLKPRKAQLVA 8938
Query: 396 SLDTPVTFKWVPSHRG 349
DT TFKW+P H G
Sbjct: 8939 LTDTSATFKWLPPHTG 8954
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = -2
Query: 576 ILYNLYTSQIYRHVTE*SLQNDNMEFLIISDSKSVLMALDKCHIHYRNNYLLYKIREALT 397
+ Y +Y + ++ + S + D E+ ++ ++K D HI + L + + +
Sbjct: 8901 VKYEIYDNIASLYIPKMS-KRDGGEYTVVLENKYGKDESD-LHITMVDTPLKPRKAQLVA 8958
Query: 396 SLDTPVTFKWVPSHRG 349
DT TFKW+P H G
Sbjct: 8959 LTDTSATFKWLPPHTG 8974
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = -2
Query: 576 ILYNLYTSQIYRHVTE*SLQNDNMEFLIISDSKSVLMALDKCHIHYRNNYLLYKIREALT 397
+ Y +Y + ++ + S + D E+ ++ ++K D HI + L + + +
Sbjct: 8901 VKYEIYDNIASLYIPKMS-KRDGGEYTVVLENKYGKDESD-LHITMVDTPLKPRKAQLVA 8958
Query: 396 SLDTPVTFKWVPSHRG 349
DT TFKW+P H G
Sbjct: 8959 LTDTSATFKWLPPHTG 8974
>U64845-5|AAC48027.1| 581|Caenorhabditis elegans Hypothetical
protein F45F2.6 protein.
Length = 581
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 126 LYIYHTMAYLEVLFGFLHTNCLYALSIISNSFPII 230
L+IYHT +E FGF H ++++ S P++
Sbjct: 508 LFIYHTFETIESNFGFPHKMSSVYSALLNISSPLV 542
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 123 LLYI--YHTMAYLEVLFGFLHTNCLYALSIISNSFPIICDFF 242
++YI H L + GFLH L L +SNS IC+ F
Sbjct: 922 MIYICTQHIADALNQIVGFLHLKSLQNLYTMSNSSDEICNLF 963
>AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical
protein Y119C1A.1 protein.
Length = 256
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 93 NRLRFGHCQTPSHLFRFKIIDNNRCTYC 10
N R HCQ PS F ID C YC
Sbjct: 222 NSYRCHHCQLPSRRFDPSEIDFCGCEYC 249
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
(imitation swi) homologprotein 1 protein.
Length = 1009
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 278 EFLLRTFFLT*NKEVANYGKAIGNYAQSIKAVGMQKSKKNFQVSHGMINIKEP 120
+F R F +KE+ +Y K IG A+ K V ++++K +IN P
Sbjct: 730 QFYPRRLFELLDKEIYHYRKTIGYVAERPKDVPPKEAEKRQAEEQKLINNARP 782
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +1
Query: 115 FLGSFIFIIPW--LTWKFFLD 171
FLG F+FIIPW FFLD
Sbjct: 76 FLGIFLFIIPWCFCCVPFFLD 96
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 501 FLIISDSKSVLMALDKCHIHYRNNYLL 421
FL+ SD +SV+ + CH + +N++ +
Sbjct: 257 FLVYSDEQSVIKLMSACHRNSQNDFFV 283
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 501 FLIISDSKSVLMALDKCHIHYRNNYLL 421
FL+ SD +SV+ + CH + +N++ +
Sbjct: 257 FLVYSDEQSVIKLMSACHRNSQNDFFV 283
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 501 FLIISDSKSVLMALDKCHIHYRNNYLL 421
FL+ SD +SV+ + CH + +N++ +
Sbjct: 43 FLVYSDEQSVIKLMSACHRNSQNDFFV 69
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 501 FLIISDSKSVLMALDKCHIHYRNNYLL 421
FL+ SD +SV+ + CH + +N++ +
Sbjct: 257 FLVYSDEQSVIKLMSACHRNSQNDFFV 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,167
Number of Sequences: 27780
Number of extensions: 263760
Number of successful extensions: 685
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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