Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d20
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   5.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.3  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   7.3  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   9.7  

>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 212 IDKNHTPYLNEKVDDTNQRTMQLFHEQNMVT*DSHDRLVLILYN 343
           I KN   +LNE ++++ +  MQL+  +N     S+ R++ I  N
Sbjct: 34  IRKNDAAFLNESLENSFEFLMQLYAPKNSEI--SYHRILYIFIN 75


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 170 VSRL*TKLKHNLINIDKNHTPYLNEKVDDTNQRTMQLFHEQNMV 301
           V+ L   L++ ++NI K  TPY N+  D  +      FHE+ ++
Sbjct: 815 VNLLNYSLENVVLNIFKKQTPYYNQ-ADKVHLWQSSRFHEKQIL 857


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 254 RLPFR*GKGCGFYQY 210
           ++PF  GKGCGF QY
Sbjct: 327 KIPF--GKGCGFVQY 339


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 79  WLDLVSLH*HLEAVYVKFYCSR 144
           W+ L+SLH  L +  ++FY ++
Sbjct: 147 WIGLISLHPKLRSYLIQFYSAK 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,260
Number of Sequences: 5004
Number of extensions: 49536
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)