Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d20
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 373 WLRLRYGITEHI 408
           W+RL YG T HI
Sbjct: 61  WIRLTYGQTNHI 72


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 373 WLRLRYGITEHI 408
           W+RL YG T HI
Sbjct: 99  WIRLTYGQTNHI 110


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 409 VYVQLFHNADVTSSVR*CLT 350
           VY+++F N  V  S+R  LT
Sbjct: 138 VYIRIFPNGSVLYSIRISLT 157


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 409 VYVQLFHNADVTSSVR*CLT 350
           VY+++F N  V  S+R  LT
Sbjct: 138 VYIRIFPNGSVLYSIRISLT 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,782
Number of Sequences: 438
Number of extensions: 3327
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)