Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d18
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    30   0.30 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   1.6  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   1.6  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    26   3.7  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    26   5.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.5  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   8.7  

>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +1

Query: 463 NESDAKRNFSERVRNDIMRVLRE 531
           N++DA++N  +R+RND+++ L E
Sbjct: 72  NDNDARKNLRKRLRNDVLKDLAE 94


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 255 RN*SYPNAIAAYNKHHGGPV--LHASRHGGRAAPVPEPSDRLRPQPRAR 395
           R  S  NA  + NK +  P+     S   G AAP P PS+   P    R
Sbjct: 141 RRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTPSPSNSKSPPSENR 189


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 472 DAKRNFSERVRNDIMRVLRETDEIGTQGQRDSGRRIGER 588
           + +++  E    DI ++ RE +E+G +    S R  GER
Sbjct: 62  EKQKSIRETYEKDINKLKRELEELGVEANTASYRNRGER 100


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 264 SYPNAIAAYNKHHGGPVLHASRHGGRAAPVPEPSDRLRP 380
           S P    AY+   GGP++H S +     P+   S   RP
Sbjct: 243 STPTGSTAYSLSSGGPIVHPSINALLLTPICPNSLSFRP 281


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +2

Query: 110 WLRKRQCARNFNNGVQ*RRQQEV------PVSRHKWAIVSIHQKNTL 232
           W+RK  C  NF+   + +  QEV      P++R K  I  IH   TL
Sbjct: 415 WVRKLDCCSNFSTDHENKSLQEVDFDASKPITR-KSLIPRIHNHQTL 460


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 309  VHHGVCYR---LRWHWGNFNFFIAHYRSPR 229
            V HGVCYR   +R + G  + F+  Y S R
Sbjct: 3340 VGHGVCYRRLSIRSNGGTIHPFVIQYPSAR 3369


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/87 (18%), Positives = 36/87 (41%)
 Frame = +1

Query: 277 PSQPITNTMVDPCYTPAGMAAEPLRFPNLVTGFDRSPEHAARAALYTRYTQYEWNQNTIK 456
           P+Q   +T+++  Y+P     +      +++G +  P+  A   +    +  +    T+ 
Sbjct: 10  PTQQNDSTIIESRYSPEEYLEQSFEIQRIISGENSEPQTVASQEI----SDSQEEDTTLT 65

Query: 457 NYNESDAKRNFSERVRNDIMRVLRETD 537
           +    D    ++E V +D  R   E D
Sbjct: 66  SSQFEDCGTEYNEVVEDDEFRSEDEDD 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,683
Number of Sequences: 5004
Number of extensions: 57499
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)