Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d18
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    29   2.6  
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ...    28   4.5  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    27   7.9  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   7.9  

>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 551 WVPISSVSLNTRIMSFLTLSEKFL 480
           WVP+S+V++N  ++ ++  S KF+
Sbjct: 188 WVPVSAVTVNVSMILYIKFSRKFI 211


>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
           protein Y39A1B.2 protein.
          Length = 1003

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 602 VVSVILSPILRPESLCP-WVPISSVSLNTRIMSFLT 498
           V  V +S IL PE +   WV  S VS+N  I+ F+T
Sbjct: 717 VAVVAVSLILIPEPVASLWVSFSIVSINIGILGFMT 752


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 348 PVPEPSDRLRPQPRARGPSSSL 413
           PVP+P    RP PR   P S L
Sbjct: 355 PVPQPQQATRPAPRPVAPKSHL 376


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3b protein.
          Length = 1398

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 609  PKRSVCYSFANSPPGVPLSLGTNFVGFP*HPHNVVPDSFRKIPLR 475
            P+ +VC   A +P  VPL+ GT   G   + +N  PD  + +P +
Sbjct: 995  PETTVCCPGATNPCSVPLAPGTGNAGLARYYYN--PDDRQCLPFQ 1037


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 609  PKRSVCYSFANSPPGVPLSLGTNFVGFP*HPHNVVPDSFRKIPLR 475
            P+ +VC   A +P  VPL+ GT   G   + +N  PD  + +P +
Sbjct: 1413 PETTVCCPGATNPCSVPLAPGTGNAGLARYYYN--PDDRQCLPFQ 1455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,862
Number of Sequences: 27780
Number of extensions: 338399
Number of successful extensions: 1054
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)