Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d17
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    30   0.27 
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    28   0.83 
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.4  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = -1

Query: 341 VASVAWLTVRTFSTISSNFLFRISRYRQKKMVS----TVIIPALICNQVTSWLTKWNLVT 174
           ++S A++    F+T+SS F F++ +  ++ ++     ++I   + C ++TSW+  +  +T
Sbjct: 372 ISSFAFIGFTLFATLSSLF-FKVLKIHRRPIIVFGSLSIIFIHIYCFKITSWVNLYGWIT 430

Query: 173 RNLGTT 156
             +  T
Sbjct: 431 CTIART 436


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 337 ATLEVERGRQAAAVKVCVELLDASTEHYEQLALLRDELQKR 459
           A LE ER +  A  +  + + +  ++H  ++A LRDELQ +
Sbjct: 513 AMLEAERSQGTAISRARLRMEELLSDHNFEIADLRDELQDK 553


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 281 FRISRYRQKKMVSTVIIPALICNQVTSWLTKWNLVTR 171
           FR+S    K+++S     A +C  + S  + WNL  R
Sbjct: 348 FRLSDRLSKRLISVDYDYATVCETLDSKFSNWNLPHR 384


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 396 KLHADLHRRGLTTTFYLQCGIGSLAHRKNIFNHIV*FSF 280
           KL + ++R G T  F+    +GSL  R+N    ++  SF
Sbjct: 739 KLPSTVYRLGETKVFFKASVLGSLEDRRNALLRVIFNSF 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,578
Number of Sequences: 5004
Number of extensions: 45599
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)