Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d17
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688     32   0.37 
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360...    31   0.64 
11_06_0335 + 22441240-22441548,22441958-22442028,22442321-224423...    29   3.4  
05_03_0182 + 9332280-9332363,9334212-9334286,9334390-9334437,933...    29   3.4  
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347     28   6.0  
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911...    27   7.9  
02_05_1321 - 35695474-35696161,35696315-35696547                       27   7.9  

>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
          Length = 761

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 220 INAGIITVLTIFFCLYLEIRKRKLDDMVENVLTVSQATDATLEVERGRQAAAVKV-CVEL 396
           ++ G+   L ++FCLYL ++KRKL    +     +       ++  G  A   K+   E 
Sbjct: 370 VSVGVFLPLLMYFCLYLVLQKRKLIRTKQRFFEQNGGVILQQQMHSGGGAGGFKIFSTEE 429

Query: 397 LDASTEHY 420
           L+ +T ++
Sbjct: 430 LEKATNNF 437


>02_01_0497 +
           3607227-3607462,3607600-3607661,3608138-3608286,
           3608418-3608538,3608638-3608793,3609041-3609086,
           3609414-3609480,3609553-3609629,3610180-3610249,
           3610956-3611014,3611105-3611213,3611552-3611611,
           3611701-3611763,3612007-3612131,3612260-3612422,
           3612506-3612565,3612802-3612860,3613057-3613138,
           3613227-3613290,3613506-3613573,3613648-3613758
          Length = 668

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 466 LHFVSAAHLAAVLIARNVQWKHREAPRRPSPPRL-DDHVLPPMW-HR*LGSP 317
           LH  ++AH AA   +R+   +   A R+P+ P   DD V+   W H  LG P
Sbjct: 330 LHESNSAHPAAPPFSRSPSSRSSSASRQPTGPMAQDDSVVSAQWLHEHLGQP 381


>11_06_0335 +
           22441240-22441548,22441958-22442028,22442321-22442381,
           22443252-22443326,22443431-22443478,22443565-22443666,
           22443971-22444032,22444187-22444284,22444361-22444470
          Length = 311

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 415 HYEQLALLRDELQKRNVMKRQ 477
           H E++A L+ E++KR V+KRQ
Sbjct: 180 HAERIAALKKEVEKREVLKRQ 200


>05_03_0182 +
           9332280-9332363,9334212-9334286,9334390-9334437,
           9334513-9334596,9334905-9334966,9335109-9335206,
           9335281-9335390
          Length = 186

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 415 HYEQLALLRDELQKRNVMKRQ 477
           H E++A L+ E++KR V+KRQ
Sbjct: 61  HAERIAALKKEVEKREVLKRQ 81


>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
          Length = 137

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -2

Query: 406 KHREAPRRPSPPRLDDHVLPPMWHR*LGSP*EHFQPYRLIFFSVSQD 266
           + ++  ++P  P+L  +  PP WH     P   + P + +  S  +D
Sbjct: 84  EEKKDDKKPEQPKLVFYPPPPAWHAHAAPPSYSYPPPQYVVHSAEED 130


>05_03_0168 -
           9116648-9117775,9118699-9118885,9119724-9119821,
           9119948-9120114,9122242-9122578
          Length = 638

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 341 VASVAWLTVRTFSTISSNFLFRISRYRQKKMVSTVIIPALICNQVTSWLTKWNLV-TRNL 165
           V   A++T    STI+   +F   ++    ++  VI     CN   + LT W++  T   
Sbjct: 331 VPVAAYITCAAISTIAIPAMFNQIKFYHLAVLYMVIPVVTFCNTYATGLTDWSVAPTYAK 390

Query: 164 GTTF 153
            TTF
Sbjct: 391 FTTF 394


>02_05_1321 - 35695474-35696161,35696315-35696547
          Length = 306

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 496 VRWRVGIAFSLHFVSAAHLAAVLIARNVQWKHREAPRRPSPPRLDDHVL 350
           +R + G ++ +  +    +   L+A NV WK+RE  +R  P   ++++L
Sbjct: 204 IRSKYGRSYDVTLIKKEFMGRNLLAMNVMWKYRE--QRSFPLTEEEYLL 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,426
Number of Sequences: 37544
Number of extensions: 316004
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)