Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d17
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -2

Query: 502 NSVRWRVGIAFSLHFVSAAHLAAVLIARNVQWKHREAP 389
           N +RW    A +   +S   + A +    + + HR+ P
Sbjct: 507 NHIRWNSAFAIAPAVISCLGIVATMAVACLLFHHRDTP 544


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -2

Query: 502 NSVRWRVGIAFSLHFVSAAHLAAVLIARNVQWKHREAP 389
           N +RW    A +   +S   + A +    + + HR+ P
Sbjct: 597 NHIRWNSAFAIAPAVISCLGIVATMAVACLLFHHRDTP 634


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 318 GEPSYRCHIGGRTWS 362
           GE  YRC+I G+T++
Sbjct: 88  GEDPYRCNICGKTFA 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,851
Number of Sequences: 438
Number of extensions: 3573
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)