Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d16
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    67   2e-12
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    41   1e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.016
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    33   0.028
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   1.1  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    28   1.4  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    27   1.8  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   4.3  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.6  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   7.5  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   9.9  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 32/101 (31%), Positives = 59/101 (58%)
 Frame = +3

Query: 291 QYPSYAEVMNEVERLKAGALRLLTREQVIYMLNKWVLEPDIKHELCLAFKVFDTEKRGFL 470
           Q P+ AE+ + +  + A     +   + + M+ + + + D + E+  AFKVFD +  G++
Sbjct: 43  QSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYI 102

Query: 471 EIDELKTIVTSYAEPFSEEETREMLRDANVRGDGNVFYESF 593
            ++EL  ++TS  E  S+EE  +M+R+A+  GDG + YE F
Sbjct: 103 TVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 42/78 (53%)
 Frame = +3

Query: 378 YMLNKWVLEPDIKHELCLAFKVFDTEKRGFLEIDELKTIVTSYAEPFSEEETREMLRDAN 557
           ++ NK + E + + E   AF+VFD +  G++E  +    + +  E  S+ E + M+++A+
Sbjct: 66  FVSNK-LRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEAD 124

Query: 558 VRGDGNVFYESFVESLFS 611
               G+  Y  FV+ + +
Sbjct: 125 PTNSGSFDYYDFVQRIMA 142


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 432 AFKVFDTEKRGFLEIDELKTIVTSYAEPFSEEETREMLRDANVRGDGNVFYESFV 596
           AFK+FD++K   ++  EL+  + +      + E  ++LRD +  G G +  E FV
Sbjct: 42  AFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFV 96


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 7/133 (5%)
 Frame = +3

Query: 258 LNLKKFHRRNFQYPSYAEVMNEVERLKAGALRLLTREQVIYMLNKWVLEPDIKHELCLAF 437
           + L  FHRR         +  ++ R K     + + +   Y   KWVLE DI   L L F
Sbjct: 529 IGLAIFHRRFLDAFFVVSLYKKLLRKKVSLADMESIDAEFYRSLKWVLENDITGILDLTF 588

Query: 438 KVFDTEKRGFLEIDELKTIVTSYAEPFSEEETR-------EMLRDANVRGDGNVFYESFV 596
            V   E+  F E+  ++ I        +EE  +       E      V    N FY  FV
Sbjct: 589 SV---EEDHFGEVRTVELITNGENIEVTEENKKKYVDLVTEWRVSKRVEQQFNAFYSGFV 645

Query: 597 ESLFSVAPELYEI 635
           E    V+P+L  +
Sbjct: 646 E---LVSPDLVNV 655


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +3

Query: 63  INSNYFFDTMAVLDAYNPLQNVSLRFNEDQLKEIGEWFENNAKPQLT---STDGDPIRAI 233
           I +NY F     L     L+     F +   ++ GE+F+N  K +LT    +D + +R +
Sbjct: 461 ILNNYIFSCPLFLVTPEELEEQYTDFFKKLKEKYGEFFQNLLKKELTGKPESDLEGLRLV 520

Query: 234 TVDKFVSFLNLK-KFHRRNF 290
            V    ++ NLK  F  R F
Sbjct: 521 GVQLQATYENLKSNFSARIF 540


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +3

Query: 366 EQVIYMLNKWVLEPDIKHELCLAFKVFDTEKRGFLEIDELKTIV-----TSYAEPFSEEE 530
           ++ I  L+ + +  + + +L  AFK++D ++ G++   EL  ++     T+  E   ++ 
Sbjct: 76  QEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQI 135

Query: 531 TREMLRDANVRGDGNVFYESF 593
             + + + +   DG + +E F
Sbjct: 136 VDKTIMEVDKDRDGKISFEEF 156


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 471 EIDELKTIVTSYAEPFSEEETREMLRDANVRGDGNVFYESFVESLFSVAPELYE 632
           ++DE    +  Y E +      E   D   R DG   Y+S V S + +A +LYE
Sbjct: 37  DVDEQSRKLQEYFEFWDRNHENESEEDRARRIDG---YKSVVNSYYDLATDLYE 87


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 EQVIYMLNKWVLEPDIKHELCLAFKV 443
           ++V Y   KW+   D+   LCL F V
Sbjct: 450 DEVYYESLKWIKNNDVDESLCLNFSV 475


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 599 FNKTFIKYISIATDICIT*HFTCLLF 522
           F  TF+    IA   CIT  F CL+F
Sbjct: 52  FLHTFLADCEIAKSTCITSVFNCLIF 77


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +3

Query: 111 NPLQNVSLRFNEDQLKEIGEWFENNAKPQLTSTDGDPIRAITVD 242
           N  +N+S+   +D+++E+G+         +  +   P+   T+D
Sbjct: 147 NVSENISVNTEDDKVEEVGQKLNYTKITSIDQSQETPVHLSTID 190


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 477 DELKTIVTSYAEPFSEEETREMLRDANVRGDGNVFYESFVESLFSVAPELYE 632
           ++LK     Y    S  +  +++  A+ R +GN +Y+  ++  F++  E  E
Sbjct: 38  EQLKLYHEDYNSSVSISDDEKVIISADNRLEGNRYYDQVLQKSFTINYETME 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,127
Number of Sequences: 5004
Number of extensions: 48637
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)