Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d15
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    28   1.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.3  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   7.1  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    25   7.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.1  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   7.1  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.4  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 226 IPLANVISKTGSQIETTHANFRNEVK 303
           + L+NV   T  QI T+H  FR+EVK
Sbjct: 143 LSLSNVQDPTVMQINTSHHRFRSEVK 168


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -2

Query: 344 SRNLPRLRCLELWGLTS----LRKFAC 276
           +R +P+L+C+  WG T     LRKF C
Sbjct: 911 TRFVPKLKCIPYWGSTKDRKILRKFWC 937


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 641 FNKFGNRSKQNVYG 600
           FN FGN S Q+VYG
Sbjct: 416 FNYFGNDSSQSVYG 429


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 226 IPLANVISKTGSQIETTHANFRNEVKPQSSKQRSR 330
           IPL+ + + +  Q + T +N  N  KP  SKQ  R
Sbjct: 144 IPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLER 178


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 373 GNWDGRA*RNPEIFHGFV 320
           G W G A R PE  HG V
Sbjct: 264 GEWTGYAKREPEFIHGSV 281


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 305  PKVLSNEAVEDFWISSGTPVPVSLGNL 385
            P  L   AV D W+ + T  PVSL N+
Sbjct: 1070 PSQLYIIAVSDKWLGAETVTPVSLSNV 1096


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 626 NRSKQNVYGFSFKKNYRMEE 567
           N S Q VYG SF  N +M+E
Sbjct: 259 NDSLQRVYGISFPDNKQMQE 278


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 204 FRNSSQTFGSSFIQICSHHFSYATFIIISQVFI 106
           FR     F S F+ IC   FSY   + I +  I
Sbjct: 137 FRQFFVLFSSDFLMICLSFFSYGLQVCIEKNMI 169


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 233  KGIISLRIAGSATPPKLSV-AASFKSAVTISPTRPSSSLA 117
            +G  S  IA +A+   LS  AAS  S VT S T  SSS A
Sbjct: 1105 EGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSA 1144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,806
Number of Sequences: 5004
Number of extensions: 48278
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)