Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d15
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    29   3.2  
11_06_0437 - 23533218-23536382                                         28   5.6  
10_08_0920 - 21580057-21580926                                         28   7.4  
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439...    27   9.7  
03_01_0504 - 3792170-3792565                                           27   9.7  

>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 181 ESLGGVAEPAIRNEIIPLANVISKTGSQIETTHANFRNEVKPQSSKQRSR 330
           E++     P +  E IPL   +S + S+ E+THA+     K + ++   R
Sbjct: 61  ETVSDQGPPPVLEEFIPLKPSLSLSSSEEESTHADAAKSGKKEEAETSER 110


>11_06_0437 - 23533218-23536382
          Length = 1054

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 389  LLDFLGKLGRACLTKSRNLPRLRCLELWGLTSLR---KFACVVSIWLPV 252
            L D L  +G   L +  NLP+LR L +    +LR   +F C+  +WL V
Sbjct: 971  LSDNLSIIGCKGLKRISNLPQLRDLRVARCPNLRCVKEFGCLQQLWLGV 1019


>10_08_0920 - 21580057-21580926
          Length = 289

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 209 AGSATPPKLSVAASFKSAVTISP-TRPSSSLA 117
           A SA+P  +  AA+  +A T SP + PSSSL+
Sbjct: 161 AASASPKDVQAAAALAAAFTTSPSSSPSSSLS 192


>12_02_1032 +
           25542420-25542573,25543511-25543577,25543816-25543918,
           25544435-25544505,25544639-25544702,25545260-25545316,
           25545435-25545593,25545967-25546035,25546111-25546202,
           25546579-25546657,25546923-25547088,25547480-25547604,
           25547737-25548078,25548271-25548432,25548520-25548624,
           25548766-25548860,25548948-25549044,25549848-25550165,
           25550228-25550296
          Length = 797

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 442 KTAVDVKRRVEKKSIQRNPRRSIGNGTKKPCPRC 543
           K  + +K R+ K SI R+P RSI   + K    C
Sbjct: 482 KVLIHMKERLAKSSIIRSPYRSISRTSDKVACHC 515


>03_01_0504 - 3792170-3792565
          Length = 131

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 281 ACVVSIWLPVFEITLAKGIISLRIAGSAT 195
           ACV S   P + +T + GI SL++AG A+
Sbjct: 99  ACVASSVRPSWFLTASPGIASLQVAGRAS 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,364,105
Number of Sequences: 37544
Number of extensions: 286554
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)