Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d15
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   2.8  
AF036687-1|AAM75374.1|  173|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 76   NDTELTKKAPNKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLAN 240
            N+ E+    P+  +  +    V E   A   EAA E +G +  P++ +EI+   N
Sbjct: 1587 NEAEILASMPDPQMVAERSAAVAEAAAA---EAAVERIGALPPPSVVHEIVHQVN 1638


>AF036687-1|AAM75374.1|  173|Caenorhabditis elegans Hypothetical
           protein C08G9.1 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 144 SYATFIIISQVFIGSFFC*LCIVFLKFHCKL 52
           S    ++I  + +G F   +C++FL +HCK+
Sbjct: 144 SLIVLLVIIPLSVGGFA--VCLIFLNYHCKM 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,002
Number of Sequences: 27780
Number of extensions: 263220
Number of successful extensions: 707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)