Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d15
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.9  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   5.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.8  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 638 NKFGNRSKQNVYGFSFKKNYRMEESLKQQECPHLGH-GFLVPFPIDL 501
           NKF +  K    G ++     + ES + ++ P  GH   LV F ++L
Sbjct: 831 NKFKDIIKIKTIGSTYMAASGITESAESEDGPRWGHLSTLVEFALEL 877


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 213 NCRFRNSSQTFGSSFIQICSHH 148
           N   ++  + FG+ F Q C HH
Sbjct: 4   NFTLQSLKKDFGTYFQQYCLHH 25


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 199 AEPAIRNEIIPLANVISKTGSQIETTHANFRN 294
           A+P   + +I    ++S TG  +  +H  FR+
Sbjct: 98  ADPQYSSAVINTNVIVSHTGEVVWLSHGIFRS 129


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 505 SIGNGTKKPCPRCGHSC 555
           SI  GT   C  CG SC
Sbjct: 27  SIRQGTTSYCLGCGDSC 43


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 84  CIVFLKFHCKLY 49
           CIV L  +C+LY
Sbjct: 205 CIVMLGIYCRLY 216


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  ELTKKAPNKNLANDDEGRVGEMVTAD 162
           E+T +   K L+N +  +VG+ VT +
Sbjct: 424 EITWELDGKRLSNTERLQVGQYVTVN 449


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 632 FGNRSKQNVYGFSFKKNYRMEESL 561
           F + S  N Y  +FK N   EE+L
Sbjct: 48  FTSSSGDNTYTKTFKMNVPFEETL 71


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 632 FGNRSKQNVYGFSFKKNYRMEESL 561
           F + S  N Y  +FK N   EE+L
Sbjct: 50  FTSSSGDNTYTKTFKMNVPFEETL 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,244
Number of Sequences: 438
Number of extensions: 3872
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)