Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d14
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   1.9  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   2.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   4.5  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   4.5  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   5.9  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   7.8  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   7.8  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 325 LSRHGSGCVIVIKATKTGSIFIYGLIRFNITIAKNTLINVQ 447
           +S+   G V + +   TG  F   +++ +  IAKN +INV+
Sbjct: 595 ISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVINVR 635


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -3

Query: 464 VFFCLSCTFISVF--LAMVMLNRINP 393
           V F +SC F+S+F  L +++L  INP
Sbjct: 387 VCFVVSCIFVSIFDTLTVLLLTWINP 412


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 78  HSKHKEFNIPQHISEYSIHFINL 10
           HS+H E NIP + + YSI  +++
Sbjct: 94  HSEHPENNIPPNDNNYSISDLSI 116


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 274 LRILYCRTRS*SLDCLCLSRH 336
           LR++YC  R+ ++ CL  S+H
Sbjct: 14  LRVIYCIDRASAIRCLAKSQH 34


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 453 FVLYIYQCIFSYGNVKSNQSVNKY*TRFRGF 361
           F +Y+ + I   GN K +QS+     R+RGF
Sbjct: 520 FDIYVKEYIPVIGNTKDHQSLTFLQKRWRGF 550


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 127 NSNQQNTKRKKRNLLKSQQ 71
           N + Q+ K+KK+ L KSQQ
Sbjct: 53  NDDSQSKKKKKKKLKKSQQ 71


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 275 CVFSTVGHEAEVWTVYA 325
           C+FS + H   VW +Y+
Sbjct: 250 CLFSFIAHSDSVWALYS 266


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 224 NYSTDLYCVRGGVVLLFCVFST-VGHEAEVW 313
           NY  ++ C+R G +LLF       GH AE W
Sbjct: 2   NYRRNI-CLRIGWMLLFAFIPAYAGHSAEEW 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,004
Number of Sequences: 5004
Number of extensions: 28742
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)