Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d14
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    31   0.63 
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931...    29   1.4  
04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061     27   7.7  

>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 213 MQPKIIVLISTVFAVALCYYFAYSLLSDTKLKFGLFMP*P 332
           +QP +++     FA+   YY  YSLL +  LK  LF+  P
Sbjct: 32  LQPDLVLFTGAPFALLYLYYIIYSLLCEVTLKC-LFLTSP 70


>10_08_1025 -
           22391267-22391767,22392641-22392736,22392838-22393106,
           22393257-22393431,22393503-22393718,22393819-22393926,
           22394020-22394544,22394631-22394819,22394924-22395041,
           22395172-22395437,22395521-22395658
          Length = 866

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 366 GFYYDDATGAMPAKA*TVQTSASCPTVENTQNNSTTPPR 250
           GF    AT   PA A T+ +S +  T       S+TPPR
Sbjct: 754 GFAIFPATSPSPAAAPTISSSTTTTTGNGNGETSSTPPR 792


>04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061
          Length = 346

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 215 AA*NYSTDLYCVRGGVVLLFC 277
           AA  Y  ++ CV GGV+++FC
Sbjct: 232 AARTYGREVMCVIGGVLIVFC 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,766
Number of Sequences: 37544
Number of extensions: 156786
Number of successful extensions: 331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)