Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17d13
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.012
12_02_0046 + 12830974-12832386 27 2.5
11_06_0610 - 25449085-25453284 27 3.3
02_04_0413 + 22681957-22682035,22682253-22682788 27 3.3
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 3.3
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 27 4.3
04_03_1017 + 21747044-21748051 27 4.3
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 26 5.7
09_03_0192 + 13344558-13344942,13345038-13345591 26 7.6
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 26 7.6
04_04_0187 - 23411085-23411477,23411626-23411631 26 7.6
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 71 GYCPPVCSPPDCRPICGPASPLLCQSXVPP 160
G CPP C PP C C P PL C PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +2
Query: 80 PPVCSPPDCRPICGP--ASPLLCQSXV---PPTQRCYPVNP 187
PPV SPP + I GP ASP QS V P C P P
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCVAASAPPPWCVPPPP 319
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 80 PPVCSPPDCRPICGPASPLLCQSXVPPTQRCYPVNP 187
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 80 PPVCSPPDCRPICGPASPLLCQSXVPPTQRCYPVNP 187
PP+ SPP P+ P P+ +S PP P P
Sbjct: 1163 PPIKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1196
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 65 KMGYCPPVCSPPDCRPICGPASPLLCQSXVPPTQRC-YPVNPC 190
K G C CS +C P P SP CQ PPT C +P PC
Sbjct: 143 KPGCCCCGCSGGECPP---PPSPP-CQHECPPTPPCEHP--PC 179
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 77 CPPVCSPPDCRPICGPASPLLCQSXVPPTQRCYP 178
CPP P P G +P++ VPP C+P
Sbjct: 351 CPPSWPPQLMVPAPGICTPVVPIPLVPPLWSCFP 384
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 129 LRSFARAXCHXHNGAIL*ILASTYTAXTLKLCNAMXDFYSE 251
+RSF C+ N ++ +L CN M D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869
>04_03_1017 + 21747044-21748051
Length = 335
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 80 PPVCSPPDCRPICGPASPLLCQS---XVPPTQRCYP 178
PP + PD P P+SPL + VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 29 FLNLQVYKLKX*KMGYCPPVCSPPDCRPICGPASPLLCQSXVPPTQRCYP 178
F+N Q + K GY + P + R P SP+ + P T++C+P
Sbjct: 807 FVNSQFFSALSRKEGYIHNL--PTEGRRNLVPRSPMTIEEAFPFTRQCWP 854
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 83 PVCSPPDCRPICGPASPLL 139
P+C P P+C SPLL
Sbjct: 162 PLCIEPPSSPVCNAPSPLL 180
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 92 SPPDCRPICGPASPLLCQSXVPPTQRCYPVNPCINIY 202
S PDC CG SP C + V + +C PC +Y
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVY 122
>04_04_0187 - 23411085-23411477,23411626-23411631
Length = 132
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 74 YCPPVCSPPDCRPICGPASPLLCQSXVPP 160
Y PP PP P C P P + PP
Sbjct: 90 YWPPYWCPPPEDPTCKPCYPRYSYAPPPP 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,027,387
Number of Sequences: 37544
Number of extensions: 135289
Number of successful extensions: 399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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