Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d12
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    29   2.1  
U41508-6|ABS19459.1|  323|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41508-5|AAG00025.2|  511|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF326938-1|AAG49388.1|  511|Caenorhabditis elegans XG314 protein.      29   3.7  
Z82288-8|CAB05329.3|  328|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81102-5|CAB03205.3|  328|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z78059-6|CAH04727.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z78014-4|CAH04707.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.5  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    27   8.5  
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 171 RKFTKNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMD 329
           RKF++N  P  PR++  +  + +K +I    ++   I+  LN+    M  L+D
Sbjct: 10  RKFSQNHSPPPPRRSSALHDAIDKLSIVARVTNAITIQKGLNDKSMKMANLLD 62


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 26/92 (28%), Positives = 39/92 (42%)
 Frame = -3

Query: 293 KHVFNSLYIRS*QFNVIFFTRALYFSCFSWSSWPLIFCEFSYIRAI*KCSHIACTHLFVT 114
           +H++   YI    F V+FF + +    F WS    I  E + I        I+   +  T
Sbjct: 226 QHIYLQNYIFIQSFLVLFF-KLIPVPIFIWSKTTSILTEMAMI--------ISLGDVITT 276

Query: 113 KLILCRFNILISHFNCVSQKCLDNYKNFAFHK 18
            LI     I +S+F C   + +D Y  F  HK
Sbjct: 277 PLI-----IQLSYFRCNVHEVIDLYSTFDLHK 303


>U41508-6|ABS19459.1|  323|Caenorhabditis elegans Hypothetical
           protein W01C8.5b protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 183 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 290
           K    G+P   G ++ S E+ N      D++ IKN+
Sbjct: 92  KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 127


>U41508-5|AAG00025.2|  511|Caenorhabditis elegans Hypothetical
           protein W01C8.5a protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 183 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 290
           K    G+P   G ++ S E+ N      D++ IKN+
Sbjct: 280 KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 315


>AF326938-1|AAG49388.1|  511|Caenorhabditis elegans XG314 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 183 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 290
           K    G+P   G ++ S E+ N      D++ IKN+
Sbjct: 280 KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 315


>Z82288-8|CAB05329.3|  328|Caenorhabditis elegans Hypothetical
           protein M02B1.1 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -3

Query: 395 ILFRERSIQWIDVLWIQISSVRIHKC*HYRPTLVKHVFNSLYIRS*QFNVIFFTRALYFS 216
           +L+   SI W+ VLW  +  + +  C  Y   + K+   S+ I       IF    +   
Sbjct: 227 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 286

Query: 215 CFSWSSWPLIFCEFSY 168
            F   +  +IF  F Y
Sbjct: 287 TFLLGASLVIFSIFLY 302


>Z81102-5|CAB03205.3|  328|Caenorhabditis elegans Hypothetical
           protein M02B1.1 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -3

Query: 395 ILFRERSIQWIDVLWIQISSVRIHKC*HYRPTLVKHVFNSLYIRS*QFNVIFFTRALYFS 216
           +L+   SI W+ VLW  +  + +  C  Y   + K+   S+ I       IF    +   
Sbjct: 227 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 286

Query: 215 CFSWSSWPLIFCEFSY 168
            F   +  +IF  F Y
Sbjct: 287 TFLLGASLVIFSIFLY 302


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
 Frame = +3

Query: 75  MGNQNIKAAQNKFCDKQMSAGD-VGTFSNGSNIRKFTKNQGPGRPRKTGKIQSSR-EKDN 248
           +  +N  A  ++  +  +  G  V T  NG   +  TK  G     +T  ++S + E   
Sbjct: 381 INKKNYTAKWSRLYNSTVEGGQQVETIRNGFFRQITTKTSGRNVFLETLNLKSPKIEMSG 440

Query: 249 I---KLSRSDI-QRIKNML---NESRPVMLTLMDPNRTNLYPQHIYPLNGSLS 386
           I    +S  DI Q++K ++   N+     LT+ DP   N+  Q   PLN +LS
Sbjct: 441 IYVLSISNMDIVQQVKWIIEVENDEPNAQLTIRDPLTLNISNQLFLPLNTNLS 493


>Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical
           protein Y57G11C.32 protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 148 HFQMALI*ENSQKIKGQEDQEKQEKYKALVKKITL 252
           H+ +  + ++   IKG+ED  KQ+  +AL K++ L
Sbjct: 544 HYHVPDLLDDFDIIKGKEDDSKQQVDEALAKQLNL 578


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 178 SQKIKGQEDQEKQEKYKALVKKI 246
           S KIKG++D EK E  + L KKI
Sbjct: 402 SSKIKGEKDFEKYETARRLKKKI 424


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 178 SQKIKGQEDQEKQEKYKALVKKI 246
           S KIKG++D EK E  + L KKI
Sbjct: 474 SSKIKGEKDFEKYETARRLKKKI 496


>Z78059-6|CAH04727.1|  362|Caenorhabditis elegans Hypothetical
           protein C34B4.3 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 242 FFTRALYFSCFSWSSWPLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHF 72
           +F+   ++S  SWS W  I    ++     K S+  C   ++  LIL    +L +HF
Sbjct: 109 WFSMVSHYSVVSWSRWMAIRKPLNFRNQKRKTSYSLCALCYLVALIL----VLSTHF 161


>Z78014-4|CAH04707.1|  362|Caenorhabditis elegans Hypothetical
           protein C34B4.3 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 242 FFTRALYFSCFSWSSWPLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHF 72
           +F+   ++S  SWS W  I    ++     K S+  C   ++  LIL    +L +HF
Sbjct: 109 WFSMVSHYSVVSWSRWMAIRKPLNFRNQKRKTSYSLCALCYLVALIL----VLSTHF 161


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 178 SQKIKGQEDQEKQEKYKALVKKI 246
           S KIKG++D EK E  + L KKI
Sbjct: 474 SSKIKGEKDFEKYETARRLKKKI 496


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 388 KSITKKLQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPLFVKSF-*FLTGYKINL 564
           ++I  KL  H  E SN  R LIS   +M+N  FT SK + +   + +SF  FL G  +  
Sbjct: 161 EAIHSKLFYHGTERSNSYRPLISNYEMMEN-KFT-SKYANYGKSWRESFKGFLIGAIVAA 218

Query: 565 TFALRSTGKRNSIYSN 612
           ++A       ++  SN
Sbjct: 219 SYAFTGDDLIDTFSSN 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,639
Number of Sequences: 27780
Number of extensions: 292154
Number of successful extensions: 839
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)