Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d11
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    29   3.6  
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    28   4.8  
X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    27   8.3  
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    27   8.3  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    27   8.3  

>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 486 TSEHSRYVSILWLIFGFEVFFDTFLYIVQHMRRIYIVKQQSHRLLFT 346
           T + S++  +    F F  +F+TF  IV  + R  ++  Q H +  T
Sbjct: 78  TEKKSKWTLVFGSAFLFFWYFETFTQIVMALNRYLVICLQKHHIFTT 124


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 447 IFGFEVFFDTFLYIVQHMRRIYIVKQQSHRLLFTF 343
           IF F  +F+T L +V  + R  I+  Q H+ +FTF
Sbjct: 91  IFLFLWYFETILQVVMGLNRYVIICLQKHK-IFTF 124


>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 448 KPENAYISTMFRCQSTEATHLCIMDADLKLNNENNYDI 561
           K EN  I     C+S E THL      L LN++N Y++
Sbjct: 146 KGENKLIKKEITCKSDELTHL----YTLILNSDNTYEV 179


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 448 KPENAYISTMFRCQSTEATHLCIMDADLKLNNENNYDI 561
           K EN  I     C+S E THL      L LN++N Y++
Sbjct: 146 KGENKLIKKEITCKSDELTHL----YTLILNSDNTYEV 179


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 1   DSLISDYLGRYISM--YIIYSHYNMSKTFVIILR 96
           D +  DY    +S+  Y+IY  YN+  TF +I +
Sbjct: 162 DQMYPDYKTELLSLQNYVIYRDYNVYMTFFVIFK 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,515,579
Number of Sequences: 27780
Number of extensions: 221735
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)